Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00793 ATGATTCATTCCACTACGAAATCAGCCAAAGAGAAAGAAAACGATCGCGGCATCAGTTCGCACATCCTCACCCTCCATCGCCGTCTTCTCCACGCCTTAAACCTCGGAACCAGATACTTTGATGACAAGACAAATAGATGGAAGTGGCAGTGCGTTAACATTGAAGTGCAGAAAAATGTACTCCGATCAATTTCTGCGTTTCTTGATTCTATTGCAGGTGATGCACGTGCCATACGTCATTCCATTGTTAAGGAATCTGCTGCTGATATTTTGGGAGCATTGTTATGGATTCTTCAATGCAAAAGTGAGCCCTTGTTAAGCATGGCATCAAATGTGGCTGTGAAGTTAGTTAGTGTTTTACCGAGCCAACAGTTGCAATTGCGATTGTTGGATCTTGTCTATTGTCTATCATCCTTGCTATCTTCACATCAAGTAGAAGTTGCAATACCTTCTGCTACTGCTTTGAATTTGATAATCTCAAATCTGAGTGCTACGAGTGAGAAGGCTGTTATTGAAGCACTGAAAGAAACAGAGATTTCCGTTTGTATTGTTCAAAATATAAAAGACTGTGGTGGGAAGAAAATTGAATATTTTCTGGAGATGGCTTCACTTTTGAGTACAGTACTGTTGAGGTGGTCTTCATCTAGGTTCCCTGTTTGTAATGATGTTGAACTTATGAAAGTTTTAGCAAACATGCATATAAAGACAGATAGTTCCATTAAACTTGTTCTTCTAAAGCTGTACACATCTTTAGCTTTATGTGATTCTGTAGTGCAAAAACTCATCGAGGGTGGAAAAGTATTTCTACAAATGATTGTGCAGGCGATGGGAAAATCAAACCCTCATGATGTTCGGATAGAGGGGTTTCGGCTTGCTCAATGTCTATTGAGATCCCAAGAAAATTGTTTAAAAGTGATGGATTTGTGTGGTGAAGCCCTTGTTGATGCCATAATTTGTGGGATGAGAGAGACAGGTCCGTCTTCCAAAAAAATTGAGAACAACTATGGTTCTGTATTAGTGGAAGCATGTAAGCTGGCTCTAATTACTCGTTGGGCTGGCGACCATCATATCAGGTTTTGGAAACAAGGAATTGATAAAGTCCTCCTTAGTCTTCTGATTGAAAATATTCATGATCAATCAACTGAACTTGTCTTGTCATTGGAAAAACAAATATCCATGGTGAAAGAGGGACTGAAAGTTAATTATCACGTTGCTGTGAGGAGTTACGTGTGGAACATTCTTGGGTGGCTTGTAATTCATTGTTCAGAAAATTCAAACCCTTACAGTTATACGCATGAGAGTGAACTCCACATCAACTTACTGATTATGTGTGCATGCTTCACTTTTGTGGATGCAATTCAAAAATGGTGCCGGATATGTCAAAATGACGTTGATGATAATTTTCAAAGTGAACCAGTATCAAGGGCTGTTCTAATGATGATTTATTCTCCATGTAATTATATTTCTTCACATGCTAGATTTGTATTATCTGATATACTAAAGGTCAAAGGCGATCCATGCTTGAAAAATTCACTACATACCATAGATTATTTATCATCTTTGAAAAGCTATAGTTCATTTGATAAACTTCAACTTGTTATTAACTTAATTGGGTTAACTTGTCTTACAAGTTTACCACAGTATCAAAGATGTATCATAGAAAGCAGAGGGATAAAGGCTGTTGTTCTTCTTGTCCAACGATGCTTAAGTAATGATGTTCATATGGAAAGGTCTGAAGTTGCTCCTCATTTGCATACTGTATTCCATAAAAGGTCTTGTTGCTGGACTGGTAAAGGAGGCTGGGAAGGTTCCAATATCCTTTTATTTTATGGTCTGTGGGGCATAGCTGAATTTCTTCATCAGTGTTGCCTTTTACCAGACAATCCTCAGCAATTTACTAGAGAGGTGACAAACATTAACACTGAATTAGTTAACAAACTTCATGATATCTGTAGTAGCACCTCTTTCAGTCCTGGAGTGAAATGGTATGTTTCTTATATTCTAAGTTATTTTGGATTTTATGGTTTCCCAAATGAATTTTCCAAAAGGATCGGGAAATCTCTTAATAAGGAAGAATATGCAGATTTGCGACTCATTGTAGCAAATGGGGATTCTGTGAGTGTTCATGGTGTTATTCTTGCTGTTCGATGTCCATCACTTCTACCTTCTCAAGTGTTATCTAGTAGTAAGAGTTCTAAAGAAATAACAGATTGTTTTGTTAGAGAGACCGTGAGAGAAGTTCGCTATTCTTCTCATGTTGATTATGAAGCGTTGTTGTTATTATTGGAATATGTGTATTTGGGACACTTGCATGCAGCAGAAGAAGAAACTGTAAAGAAGCTCAAAGTTCTTGCTAAGCGTTGCAATCTACAACCTCTCTTGCAACTGCTTTGTAGACAATCTCCAAAGTGGGACGCACCTTTCCCCAGCTTTAATCTTACTTCATCTCCTGATTCAGCTGGAAGTTATTTTTTGTTCATTCCGCATTTTTCAAAGAGAGTTACTTTTCTGAAAGGACTATTAACTGGGAAACTGTTGCTGAGATTTGCTACCTAA 2556 0.3787 MIHSTTKSAKEKENDRGISSHILTLHRRLLHALNLGTRYFDDKTNRWKWQCVNIEVQKNVLRSISAFLDSIAGDARAIRHSIVKESAADILGALLWILQCKSEPLLSMASNVAVKLVSVLPSQQLQLRLLDLVYCLSSLLSSHQVEVAIPSATALNLIISNLSATSEKAVIEALKETEISVCIVQNIKDCGGKKIEYFLEMASLLSTVLLRWSSSRFPVCNDVELMKVLANMHIKTDSSIKLVLLKLYTSLALCDSVVQKLIEGGKVFLQMIVQAMGKSNPHDVRIEGFRLAQCLLRSQENCLKVMDLCGEALVDAIICGMRETGPSSKKIENNYGSVLVEACKLALITRWAGDHHIRFWKQGIDKVLLSLLIENIHDQSTELVLSLEKQISMVKEGLKVNYHVAVRSYVWNILGWLVIHCSENSNPYSYTHESELHINLLIMCACFTFVDAIQKWCRICQNDVDDNFQSEPVSRAVLMMIYSPCNYISSHARFVLSDILKVKGDPCLKNSLHTIDYLSSLKSYSSFDKLQLVINLIGLTCLTSLPQYQRCIIESRGIKAVVLLVQRCLSNDVHMERSEVAPHLHTVFHKRSCCWTGKGGWEGSNILLFYGLWGIAEFLHQCCLLPDNPQQFTREVTNINTELVNKLHDICSSTSFSPGVKWYVSYILSYFGFYGFPNEFSKRIGKSLNKEEYADLRLIVANGDSVSVHGVILAVRCPSLLPSQVLSSSKSSKEITDCFVRETVREVRYSSHVDYEALLLLLEYVYLGHLHAAEEETVKKLKVLAKRCNLQPLLQLLCRQSPKWDAPFPSFNLTSSPDSAGSYFLFIPHFSKRVTFLKGLLTGKLLLRFAT 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00793 851 Pfam BTB/POZ domain 686 796 IPR000210 GO:0005515
Vivi4g00793 851 ProSiteProfiles BTB domain profile. 694 774 IPR000210 GO:0005515
Vivi4g00793 851 Gene3D Potassium Channel Kv1.1; Chain A 676 801 IPR011333 -
Vivi4g00793 851 SMART BTB_4 694 805 IPR000210 GO:0005515
Vivi4g00793 851 SUPERFAMILY POZ domain 673 798 IPR011333 -
Vivi4g00793 851 PANTHER OS06G0674800 PROTEIN 3 824 IPR044953 -
Vivi4g00793 851 SUPERFAMILY ARM repeat 55 680 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00793 Vivi-Chr4 17927412 17932250 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vivi4g00793 BTB 2.6e-05 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00793 - - mtr:25487018 1438.71