Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00787 ATGAGCAACATAAGCATGGTTGAAGCAAAGCTTCCACCAGGGTTCAGATTTCATCCTAGAGATGAAGAACTTGTGTGTGATTACTTGATGAAGAAGGTTACTCATAGTGATTCTCTTCTCATGATTGATGTTGATCTTAACAAGTGTGAACCATGGGATATTCCTGAAGCAGCATGTGTGGGAGGAAAAGAATGGTATTTCTATACACAAAGAGATCGCAAATATGCAACAGGCCTACGCACAAATCGTGCAACTGCATCAGGCTATTGGAAGGCAACTGGAAAAGACAGATCTATCCTTCGCAAGGGCACTCTTGTTGGCATGAGAAAAACATTAGTGTTCTATCAAGGAAGGGCACCAAAGGGAAGAAAAACTGAATGGGTTATGCATGAGTTTCGCATTGAAGGTCCTCATGGCCCTCCCAAATTTTCTTCTTCTAAGGAGGATTGGGTATTGTGTAGAGTCTTTTACAAGAATAGAGAAATTGCTACAAAACCAAGCATGGGTAGTTGCTATGATGACACAGGCTCTTCATCACTTCCAGCATTAATGGATTCATACATAAGTTTTGACCACCAAGCTCAATTCCACACAGATGAATATGAGCAAGTGCCCTGCTTCTCCATTTTCTCTCAAAACCAAATCAATCCATTCTTCAACCATACAACAAACATGGAACCAAAACTACCAACAGTCAACAACAATAACAACAATCCAACAACTACATTTGGAGGAGCACCTTATAGCTTAGACCCTTTGTCTTGTGATAGAAAGGTTTTAAAAGCTGTTTTGAGTCAACTCTCAAAAATGGAAAGAAACACTCTTGATAACAATAATAATAATAGTAGTAATCAAAATCTAAAAGGGTCATCACCAAGCTTTGGTGAAGGAAGTTCTGAGAGTTACTTATCTGAAGTGGCTATGCCCCATATGTGGAACAATTATTAA 948 0.3914 MSNISMVEAKLPPGFRFHPRDEELVCDYLMKKVTHSDSLLMIDVDLNKCEPWDIPEAACVGGKEWYFYTQRDRKYATGLRTNRATASGYWKATGKDRSILRKGTLVGMRKTLVFYQGRAPKGRKTEWVMHEFRIEGPHGPPKFSSSKEDWVLCRVFYKNREIATKPSMGSCYDDTGSSSLPALMDSYISFDHQAQFHTDEYEQVPCFSIFSQNQINPFFNHTTNMEPKLPTVNNNNNNPTTTFGGAPYSLDPLSCDRKVLKAVLSQLSKMERNTLDNNNNNSSNQNLKGSSPSFGEGSSESYLSEVAMPHMWNNY 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00787 315 SUPERFAMILY NAC domain 2 159 IPR036093 GO:0003677|GO:0006355
Vivi4g00787 315 Pfam No apical meristem (NAM) protein 12 134 IPR003441 GO:0003677|GO:0006355
Vivi4g00787 315 ProSiteProfiles NAC domain profile. 11 158 IPR003441 GO:0003677|GO:0006355
Vivi4g00787 315 Gene3D NAC domain 20 163 IPR036093 GO:0003677|GO:0006355
Vivi4g00787 315 FunFam NAC domain-containing protein 100-like 20 162 - -
Vivi4g00787 315 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 265 - -
Vivi4g00787 315 MobiDBLite consensus disorder prediction 273 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00787 Vivi-Chr4 17716293 17721096 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00787 2 313 NAC Transcription Factor Family AT1G56010 58.182 5.76e-127 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi4g00787 NAM 1.7e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00787 - - gmx:100301890 537.724