Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00780 ATGACCTGTTTCCCTTTCTCATTCAAGAAGACATCGCCGATTTCGAAACATAATCTCAACAACAACGACGAAGATATTTCGGGCATTCATAATGTTAAGATTTATACCTATAAAGAACTAAGCAAGGCCACAAATGACTTTAGTCAGGCCAATAAAATCGGAGAGGGTGGTTTCGGTTCCGTCTACCAGGGTCGTCTTAAAGGTGGAAAACTTGCTGCTATAAAAGTTCTTTCGGCCGAATCAAGACAAGGGGTGAAGGAATTCTTGACAGAGATTAACGTGATCTCCGAAATCGAGCATGAAAATTTGGTTAAACTATATGGTTGTTGTGTGGAAAGAAATAGCAGGATACTAGTTTACAATTACCTCGAAAATAACAGTCTTTCGCGAACTCTTCTAGGCGGAAGTCACAATAGTATCTACTTTGATTGGCGAACACGGTGTAGAATATGCGTTGGTGTTGCAAGCGGGCTTGCGTTTCTACACGAAGAAGTTAGGCCTCCTATCATTCATAGGGATATAAAAGCAAGCAATATTCTTCTTGATAAAGATCTTACGCCCAAGATTTCCGATTTCGGTCTTGCAAAGCTTATGCCTGCAAACGCGACTCATGTCAGCACGCGCGTAGCAGGAACATTAGGCTATTTGGCACCAGAGTATGCAATCGGAGGGAGACTTACACGAAAAGCAGACATTTACAGTTTCGGTGTCCTCCTTGTGGAGATTGTTAGTGGAAGATGTAACACGAATTCGCGACTTCCAATAGACGAACAATTCATTCTAGAAAGGACATGGGAGCTTTACGAGCGAAAGGAACTAGTTGCGCTGGTAGATACATCACTAAACGGAGAATTTGACGCCGAGCAGGCATGTAAATTTCTGAAGATTGGCCTTCTTTGCACGCAAGAATCTCCAAAGTGCCGTCCGTCCATGTCTTCTGTGGTCAAGATGCTTACCGGAGAAATGAAAGTTGATGACAGTACGATGACAAAAACGGCTTTAATTTCCGATTTTATGGACCTCAAAGTTCGAAAGAATCAAGAAAGTACTACAATCGATTTGAAGACTACATCTTCGTACAATACATCGTCTACCTCGGAGCAACAGAACTCTACCATTACATCAGTTGCAACTACACAATATGATCACAACAGCATGTAA 1161 0.4195 MTCFPFSFKKTSPISKHNLNNNDEDISGIHNVKIYTYKELSKATNDFSQANKIGEGGFGSVYQGRLKGGKLAAIKVLSAESRQGVKEFLTEINVISEIEHENLVKLYGCCVERNSRILVYNYLENNSLSRTLLGGSHNSIYFDWRTRCRICVGVASGLAFLHEEVRPPIIHRDIKASNILLDKDLTPKISDFGLAKLMPANATHVSTRVAGTLGYLAPEYAIGGRLTRKADIYSFGVLLVEIVSGRCNTNSRLPIDEQFILERTWELYERKELVALVDTSLNGEFDAEQACKFLKIGLLCTQESPKCRPSMSSVVKMLTGEMKVDDSTMTKTALISDFMDLKVRKNQESTTIDLKTTSSYNTSSTSEQQNSTITSVATTQYDHNSM 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00780 386 FunFam cold-responsive protein kinase 1 123 334 - -
Vivi4g00780 386 ProSiteProfiles Protein kinase domain profile. 47 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00780 386 MobiDBLite consensus disorder prediction 357 386 - -
Vivi4g00780 386 FunFam cold-responsive protein kinase 1 17 122 - -
Vivi4g00780 386 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 31 364 - -
Vivi4g00780 386 Gene3D Phosphorylase Kinase; domain 1 17 122 - -
Vivi4g00780 386 Gene3D Transferase(Phosphotransferase) domain 1 123 358 - -
Vivi4g00780 386 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Vivi4g00780 386 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Vivi4g00780 386 SMART serkin_6 47 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00780 386 SUPERFAMILY Protein kinase-like (PK-like) 23 318 IPR011009 -
Vivi4g00780 386 CDD STKc_IRAK 53 320 - -
Vivi4g00780 386 Pfam Protein kinase domain 48 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00780 Vivi-Chr4 17654213 17656781 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00780 16 321 Receptor kinase-like Gene Family AT1G07650 53.896 3.31e-108 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi4g00780 Pkinase 2.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00780 - - gmx:100816707 588.571