Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00748 ATGGCTGCTGCGGTTGTTGCTGCTGACATTTCAGCTGATGCCAACAAAATGGACTCTAAGCCAAAGGGTGAATCTGAATTCAGTGTTCAGAAGCTGGTTGACATGTTCACCAAGCTGAATCCTTTGGCTAAGGAGTTTTTTCCTTCTTCTTATGGTGCTGGCAATGATCATCGTGGTGGTCAGGGGTTTAATATCCTCAGACCTAATGGTTTTCTGGTCAACAATAAGGTGGCACCTAATGATGATCATCTTAACAATCGAAGGAGAAGAAACAACTTCACTCAAGGGAGGAGAAGGTTGAATGGGAGATCGCTGAAGGCTCAGAGAGAAGACAGCGTTAGAAGAACAGTTTATGTTTCTGACATTGATCAGCATGTTACTGAGGAGCGGCTTGCAGCCTTGTTCACCAATTGCGGACAAGTCATTGATTGCCGAATTTGTGGTGATCCGCATTCAGTTCTTCGATTTGCTTTTGTCGAGTTTGCTGATGAACATGGTGCAAGGGCGGCTTTAACCCTTGGTGGTACTGTGCTTGGATTCTATCCAGTGAGGGTCCTTCCTTCGAAAACTGCTATCCTTCCTGTGAATCCTACATTCCTCCCTAGGTCAGATGATGAGCGAGAAATGTGTACCAGGACTGTCTATTGTACAAATATCGACAAAAAGATTTCTCAATCTGAAGTGAAGAACTTTTTTGAGTCATCCTGCGGCGAGGTTACTCGCTTGAGGCTTTTGGGGGACCAGGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCGATAGCAGATAGTGCCATCGTTGCACTAAACTGTAGCGGCATGCTCTTGGGAACCCAGCCTGTCAGGGTAAGTCCTTCCAAGACTCCAGTGAGGCCAAGGGTCACTCGTCCAGTATCGCGTTAA 903 0.4607 MAAAVVAADISADANKMDSKPKGESEFSVQKLVDMFTKLNPLAKEFFPSSYGAGNDHRGGQGFNILRPNGFLVNNKVAPNDDHLNNRRRRNNFTQGRRRLNGRSLKAQREDSVRRTVYVSDIDQHVTEERLAALFTNCGQVIDCRICGDPHSVLRFAFVEFADEHGARAALTLGGTVLGFYPVRVLPSKTAILPVNPTFLPRSDDEREMCTRTVYCTNIDKKISQSEVKNFFESSCGEVTRLRLLGDQVHSTRIAFVEFAIADSAIVALNCSGMLLGTQPVRVSPSKTPVRPRVTRPVSR 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00748 300 CDD RRM1_CID8_like 113 192 IPR034823 -
Vivi4g00748 300 SUPERFAMILY RNA-binding domain, RBD 202 294 IPR035979 GO:0003676
Vivi4g00748 300 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 117 179 IPR000504 GO:0003723
Vivi4g00748 300 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 214 280 IPR000504 GO:0003723
Vivi4g00748 300 Pfam Ataxin-2 C-terminal region 35 50 IPR009818 -
Vivi4g00748 300 CDD RRM2_CID8_like 208 289 IPR034825 -
Vivi4g00748 300 SMART rrm1_1 213 284 IPR000504 GO:0003723
Vivi4g00748 300 SMART rrm1_1 116 186 IPR000504 GO:0003723
Vivi4g00748 300 Gene3D - 74 191 IPR012677 -
Vivi4g00748 300 Gene3D - 200 294 IPR012677 -
Vivi4g00748 300 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 212 288 IPR000504 GO:0003723
Vivi4g00748 300 MobiDBLite consensus disorder prediction 77 106 - -
Vivi4g00748 300 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 35 294 - -
Vivi4g00748 300 FunFam Polyadenylate-binding protein-interacting protein 11 80 192 - -
Vivi4g00748 300 SUPERFAMILY RNA-binding domain, RBD 78 191 IPR035979 GO:0003676
Vivi4g00748 300 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 190 IPR000504 GO:0003723
Vivi4g00748 300 FunFam Polyadenylate-binding protein-interacting protein 10 206 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00748 Vivi-Chr4 16713915 16718188 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00748 116 283 Eukaryotic Initiation Factors Gene Family AT1G71770 28.655 1.61e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00748 - - gmx:100779109 470.314