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Gene search
Sequence information
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Gene
Cds
Cds_length
GC_content
Pep
Pep_length
Vivi4g00717
ATGAAATCTACATATGAAACTTCTTTTCATGAAGAATCTGTTGTCGAACAAATTCCTGCAATTGATGGTGACCTACAAGTTCGGAAGCTTTCCCCCACTGTTAAGCACAAAGAAACTCACTTGTCTTTCTCCAAGGCATCTACATCTTGTGAGGAAATTACATCTCCTGTATCTGTAACAATTCCTAGGGCTAAACATTTTTCCAACTTCTTGGATTTTCACAAAATTGTTGGTTTCATGATTCCGCCGAAACCGCCGGATCCAAGTAAAAGCTTAGCGATAACGCCAGTATCCAAAACCCTAATTCATCTTCCCCCATTTCCTTCCCTAGAAATGGTAGCCGCAAGACCCCTCGTCACCGTCCAGGCCCTAGACTCCGACATAGCCACTAATTCCCCAACCACCCTACCCATTCCCGACATAATGCGTGCCTCAATCTGCCCATACATCTTCAATCTCGTCCACTCCAACATTTCCAATAACACCCACCAACCATACACCGTCAGCCGCAAAACTCCAATAAGTTCAAGTTCATCTCCGCAGACGTCACCTAATCTCGCTGCGGAGGAGCCAGAGCCCAAGAAGGTGAAGATGTCTACCATTACTTCTGATGATGAACAACAATGCACAACCGCCGAAGGCACTAAGATAAGATACAAGTTTCGTAAGGTAGCTATTTTCTTTGCTTACTGCGGTATTGGTTATCAGGGTATGCAAAAAAGAACTGGTACCAAGACTATAGAAGGTGAACTAGAAAAAGCCTTGTTTGTGTCTGGAGTTGTACCAAAACAGAAGACAAGGTGGATTTTGTTGAAGAAGAGGATGGTTGAAGCATATCTTTCCTGTTCCTCAGCTTCTGGAATCTCTTATTACTGTTCTGATTTGCAGCCAACTAAGTCTCTTGATGTTTTTCTTTTGAAATTCTGCTGCCATGATCAGAATGGACTATTACACGATGTTACCGCGGTTCTTTATGAGCTAGAGCTTTCTATCATCATAGTCAAGGTTTCCACTGCAACCGATGACACTGAAATTTATTTCTACCCTTCACTCATCTTAAAGAAGAAGAAAAGTCTACTTCCTTCTCACAAGATATCTTCAAATCTTGCCAGCATCTCAACTGATGTATCTCTCATAACTTCCATGATTGAGCCTCATGTCAAGGATTGGGGTTTTATGAAGATTCTCGTTTTCACCAAGTTGACATTTCTCTTAAGGTTTGTGTTCAAGAAGCTTAATTTGAATTTCGCAAACCTGCCATTAACTAACACTATAATCTTCGATCATGGACTGCATCATTCGAAGCTTACTGTTGTTGGAATTTTTCAAACTCGGTTCTCAATTGTCGCCCTCCACCTGTTTGCTAAAATGCCTTCATCTGTTTTGCAAAGTCATGGGAATAAGTTATTTTCTTTATACTATGAACACCAGGACAAGCTTGTTATTTCTTCATATAAGGTCCAATTTTATATGTACTTTACAAATCTGCTGCTAACTGCTACTCTGGTTTTTGACCCTGGACCACGCCAACTTACGCAAGGCCGGTTCGTCGTTGGTGTGACATTGATTGATGCTATGCTATACATCATCGTTACATGTATCTCAAGGAATTATAATGGATGGGAAGACACGATCTCCATCGGACTTCGACATCCAAGCTGCACATATGTGGCTTGCTCATTCTCTAACAAGACCATTTGCATATATGACTTTATGACGGGAGAAATGGTTGCCAAGTCCACAGGACATGCTGAAATTGTTACTGGTGTCATCTTTTTGCCTGACTGCAAGCATATCATTTCAGTGGATGGTGATGGTTGTGTGTTTGTATGGAAATTGTCCACTTTGCTGTCTTCTAAAATATTGGAGAAAATAATGGAAAAAGGTAATCCAATGCCTTCAAGAATCCCTAGTCAACCTCATGCTTGTAGTCATATATCATCTTGCAAAGAAGAGAGTCAGCACTGCAAGATCAATAGCATGGATGTCTCTTCATTGAAGAAAAAGAGAAAAAGTTCAAATGGAGTGCTTAACTCAAAAAGTATTCATGGAGAGGCTTTATCTTTTAAATATAATATTTTAAGACTTCCTAAATGGGCGCAAGCAAAAGTGGCTCACTGCAATGAGGTTAGTAACACATCATCAAAGGCATATTTTGCTTTATTCTGCTTGAGGTTAACGAAGAAATTCAGTGTGGCATGGTGGGTTTTTTCTTTTCCTCTAACGGTATTGGCAACAGCTTCAGCACAATATGCTCATGAAGTGAATGGAATAATGGCTATTGTTATGATGTTAATCTTAGCATTAATCTCAGTTTTGGTGTGTCTTGCATTAATCATTATATCTGCTCTCAACATTAGGGTGCCTTTAAATGCACACAAGCATATTTCAAAACAGACAAATAACATTGCTGCAATTTTAACAATATCTCTTTTCTCATCTTGA
2445
0.3984
MKSTYETSFHEESVVEQIPAIDGDLQVRKLSPTVKHKETHLSFSKASTSCEEITSPVSVTIPRAKHFSNFLDFHKIVGFMIPPKPPDPSKSLAITPVSKTLIHLPPFPSLEMVAARPLVTVQALDSDIATNSPTTLPIPDIMRASICPYIFNLVHSNISNNTHQPYTVSRKTPISSSSSPQTSPNLAAEEPEPKKVKMSTITSDDEQQCTTAEGTKIRYKFRKVAIFFAYCGIGYQGMQKRTGTKTIEGELEKALFVSGVVPKQKTRWILLKKRMVEAYLSCSSASGISYYCSDLQPTKSLDVFLLKFCCHDQNGLLHDVTAVLYELELSIIIVKVSTATDDTEIYFYPSLILKKKKSLLPSHKISSNLASISTDVSLITSMIEPHVKDWGFMKILVFTKLTFLLRFVFKKLNLNFANLPLTNTIIFDHGLHHSKLTVVGIFQTRFSIVALHLFAKMPSSVLQSHGNKLFSLYYEHQDKLVISSYKVQFYMYFTNLLLTATLVFDPGPRQLTQGRFVVGVTLIDAMLYIIVTCISRNYNGWEDTISIGLRHPSCTYVACSFSNKTICIYDFMTGEMVAKSTGHAEIVTGVIFLPDCKHIISVDGDGCVFVWKLSTLLSSKILEKIMEKGNPMPSRIPSQPHACSHISSCKEESQHCKINSMDVSSLKKKRKSSNGVLNSKSIHGEALSFKYNILRLPKWAQAKVAHCNEVSNTSSKAYFALFCLRLTKKFSVAWWVFSFPLTVLATASAQYAHEVNGIMAIVMMLILALISVLVCLALIIISALNIRVPLNAHKHISKQTNNIAAILTISLFSS
814
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Annotation information
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Seq ID
Length
Analysis
Description
Start
End
IPR
GO
Vivi4g00717
814
ProSiteProfiles
Trp-Asp (WD) repeats profile.
580
615
IPR001680
GO:0005515
Vivi4g00717
814
SUPERFAMILY
Pseudouridine synthase
220
262
IPR020103
GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vivi4g00717
814
SMART
WD40_4
573
612
IPR001680
GO:0005515
Vivi4g00717
814
SMART
WD40_4
531
570
IPR001680
GO:0005515
Vivi4g00717
814
Gene3D
-
215
291
IPR020094
GO:0003723|GO:0009982
Vivi4g00717
814
Gene3D
-
542
714
IPR015943
GO:0005515
Vivi4g00717
814
Pfam
Voltage-dependent anion channel
720
780
IPR004695
GO:0016020|GO:0055085
Vivi4g00717
814
Gene3D
-
715
788
IPR038665
-
Vivi4g00717
814
ProSiteProfiles
Trp-Asp (WD) repeats circular profile.
580
615
-
-
Vivi4g00717
814
MobiDBLite
consensus disorder prediction
164
186
-
-
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Duplication type information
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Gene
Chromosome
Start
End
Duplicated_type
Vivi4g00717
Vivi-Chr4
15643908
15649043
Tandem
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Functional genes information
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Gene
Gene_start
Gene_end
Function
Ath_gene
Identity(%)
E-value
Score
Vivi4g00717
113
178
Cytoplasmic Ribosomal Protein Gene Family
AT5G02870
53.030
8.12e-16
78.6
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Pathway information
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Query
KO
Definition
Second KO
KEGG Genes ID
GHOSTX Score
Vivi4g00717
-
K21763
vvo:131594577
1608.96
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