Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00717 ATGAAATCTACATATGAAACTTCTTTTCATGAAGAATCTGTTGTCGAACAAATTCCTGCAATTGATGGTGACCTACAAGTTCGGAAGCTTTCCCCCACTGTTAAGCACAAAGAAACTCACTTGTCTTTCTCCAAGGCATCTACATCTTGTGAGGAAATTACATCTCCTGTATCTGTAACAATTCCTAGGGCTAAACATTTTTCCAACTTCTTGGATTTTCACAAAATTGTTGGTTTCATGATTCCGCCGAAACCGCCGGATCCAAGTAAAAGCTTAGCGATAACGCCAGTATCCAAAACCCTAATTCATCTTCCCCCATTTCCTTCCCTAGAAATGGTAGCCGCAAGACCCCTCGTCACCGTCCAGGCCCTAGACTCCGACATAGCCACTAATTCCCCAACCACCCTACCCATTCCCGACATAATGCGTGCCTCAATCTGCCCATACATCTTCAATCTCGTCCACTCCAACATTTCCAATAACACCCACCAACCATACACCGTCAGCCGCAAAACTCCAATAAGTTCAAGTTCATCTCCGCAGACGTCACCTAATCTCGCTGCGGAGGAGCCAGAGCCCAAGAAGGTGAAGATGTCTACCATTACTTCTGATGATGAACAACAATGCACAACCGCCGAAGGCACTAAGATAAGATACAAGTTTCGTAAGGTAGCTATTTTCTTTGCTTACTGCGGTATTGGTTATCAGGGTATGCAAAAAAGAACTGGTACCAAGACTATAGAAGGTGAACTAGAAAAAGCCTTGTTTGTGTCTGGAGTTGTACCAAAACAGAAGACAAGGTGGATTTTGTTGAAGAAGAGGATGGTTGAAGCATATCTTTCCTGTTCCTCAGCTTCTGGAATCTCTTATTACTGTTCTGATTTGCAGCCAACTAAGTCTCTTGATGTTTTTCTTTTGAAATTCTGCTGCCATGATCAGAATGGACTATTACACGATGTTACCGCGGTTCTTTATGAGCTAGAGCTTTCTATCATCATAGTCAAGGTTTCCACTGCAACCGATGACACTGAAATTTATTTCTACCCTTCACTCATCTTAAAGAAGAAGAAAAGTCTACTTCCTTCTCACAAGATATCTTCAAATCTTGCCAGCATCTCAACTGATGTATCTCTCATAACTTCCATGATTGAGCCTCATGTCAAGGATTGGGGTTTTATGAAGATTCTCGTTTTCACCAAGTTGACATTTCTCTTAAGGTTTGTGTTCAAGAAGCTTAATTTGAATTTCGCAAACCTGCCATTAACTAACACTATAATCTTCGATCATGGACTGCATCATTCGAAGCTTACTGTTGTTGGAATTTTTCAAACTCGGTTCTCAATTGTCGCCCTCCACCTGTTTGCTAAAATGCCTTCATCTGTTTTGCAAAGTCATGGGAATAAGTTATTTTCTTTATACTATGAACACCAGGACAAGCTTGTTATTTCTTCATATAAGGTCCAATTTTATATGTACTTTACAAATCTGCTGCTAACTGCTACTCTGGTTTTTGACCCTGGACCACGCCAACTTACGCAAGGCCGGTTCGTCGTTGGTGTGACATTGATTGATGCTATGCTATACATCATCGTTACATGTATCTCAAGGAATTATAATGGATGGGAAGACACGATCTCCATCGGACTTCGACATCCAAGCTGCACATATGTGGCTTGCTCATTCTCTAACAAGACCATTTGCATATATGACTTTATGACGGGAGAAATGGTTGCCAAGTCCACAGGACATGCTGAAATTGTTACTGGTGTCATCTTTTTGCCTGACTGCAAGCATATCATTTCAGTGGATGGTGATGGTTGTGTGTTTGTATGGAAATTGTCCACTTTGCTGTCTTCTAAAATATTGGAGAAAATAATGGAAAAAGGTAATCCAATGCCTTCAAGAATCCCTAGTCAACCTCATGCTTGTAGTCATATATCATCTTGCAAAGAAGAGAGTCAGCACTGCAAGATCAATAGCATGGATGTCTCTTCATTGAAGAAAAAGAGAAAAAGTTCAAATGGAGTGCTTAACTCAAAAAGTATTCATGGAGAGGCTTTATCTTTTAAATATAATATTTTAAGACTTCCTAAATGGGCGCAAGCAAAAGTGGCTCACTGCAATGAGGTTAGTAACACATCATCAAAGGCATATTTTGCTTTATTCTGCTTGAGGTTAACGAAGAAATTCAGTGTGGCATGGTGGGTTTTTTCTTTTCCTCTAACGGTATTGGCAACAGCTTCAGCACAATATGCTCATGAAGTGAATGGAATAATGGCTATTGTTATGATGTTAATCTTAGCATTAATCTCAGTTTTGGTGTGTCTTGCATTAATCATTATATCTGCTCTCAACATTAGGGTGCCTTTAAATGCACACAAGCATATTTCAAAACAGACAAATAACATTGCTGCAATTTTAACAATATCTCTTTTCTCATCTTGA 2445 0.3984 MKSTYETSFHEESVVEQIPAIDGDLQVRKLSPTVKHKETHLSFSKASTSCEEITSPVSVTIPRAKHFSNFLDFHKIVGFMIPPKPPDPSKSLAITPVSKTLIHLPPFPSLEMVAARPLVTVQALDSDIATNSPTTLPIPDIMRASICPYIFNLVHSNISNNTHQPYTVSRKTPISSSSSPQTSPNLAAEEPEPKKVKMSTITSDDEQQCTTAEGTKIRYKFRKVAIFFAYCGIGYQGMQKRTGTKTIEGELEKALFVSGVVPKQKTRWILLKKRMVEAYLSCSSASGISYYCSDLQPTKSLDVFLLKFCCHDQNGLLHDVTAVLYELELSIIIVKVSTATDDTEIYFYPSLILKKKKSLLPSHKISSNLASISTDVSLITSMIEPHVKDWGFMKILVFTKLTFLLRFVFKKLNLNFANLPLTNTIIFDHGLHHSKLTVVGIFQTRFSIVALHLFAKMPSSVLQSHGNKLFSLYYEHQDKLVISSYKVQFYMYFTNLLLTATLVFDPGPRQLTQGRFVVGVTLIDAMLYIIVTCISRNYNGWEDTISIGLRHPSCTYVACSFSNKTICIYDFMTGEMVAKSTGHAEIVTGVIFLPDCKHIISVDGDGCVFVWKLSTLLSSKILEKIMEKGNPMPSRIPSQPHACSHISSCKEESQHCKINSMDVSSLKKKRKSSNGVLNSKSIHGEALSFKYNILRLPKWAQAKVAHCNEVSNTSSKAYFALFCLRLTKKFSVAWWVFSFPLTVLATASAQYAHEVNGIMAIVMMLILALISVLVCLALIIISALNIRVPLNAHKHISKQTNNIAAILTISLFSS 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00717 814 ProSiteProfiles Trp-Asp (WD) repeats profile. 580 615 IPR001680 GO:0005515
Vivi4g00717 814 SUPERFAMILY Pseudouridine synthase 220 262 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vivi4g00717 814 SMART WD40_4 573 612 IPR001680 GO:0005515
Vivi4g00717 814 SMART WD40_4 531 570 IPR001680 GO:0005515
Vivi4g00717 814 Gene3D - 215 291 IPR020094 GO:0003723|GO:0009982
Vivi4g00717 814 Gene3D - 542 714 IPR015943 GO:0005515
Vivi4g00717 814 Pfam Voltage-dependent anion channel 720 780 IPR004695 GO:0016020|GO:0055085
Vivi4g00717 814 Gene3D - 715 788 IPR038665 -
Vivi4g00717 814 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 580 615 - -
Vivi4g00717 814 MobiDBLite consensus disorder prediction 164 186 - -
Vivi4g00717 814 PANTHER WD REPEAT DOMAIN 62, ISOFORM G 551 711 - -
Vivi4g00717 814 MobiDBLite consensus disorder prediction 164 203 - -
Vivi4g00717 814 SUPERFAMILY WD40 repeat-like 551 615 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00717 Vivi-Chr4 15643908 15649043 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00717 113 178 Cytoplasmic Ribosomal Protein Gene Family AT5G02870 53.030 8.12e-16 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00717 - K21763 vvo:131594577 1608.96