Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00680 ATGGCGACTCCGAAACCCCAACGAACTCCACAGGAAGTGGAAGACATCATCATCCGCAAAATCTTCCACGTCACCATCACCGCCACCACCGCAACAACCACCGATTCCCGAATCGTTTATCTCGAACTAACCGCCGCCGAAATCCTCAGCGAAGGCAAAGACCTCCTTCTCTCTCGCGACCTAATGGAGAGAGTCCTGATTGATCGTCTCTCCGGCGATTTCTCTCTTTCAGGTGATGAAGCCTCCACGTTTCAGTATCTTGTTGGTTGTTACAACCGCGCTCACGATGAAGCGAAGAAAATCGTTAACATGAAGGATAAGAATCTTAGGTCAGAGATGGAGAATGTTGTGAAGCAAGCTAAGAAGTTATGTGTTTCTTATTGTAGGATTCATCTCGCAAATCCGGAGCTTTTTGCGAGTAAGGATTCGAGTTCTGATAATACTAGAACAACATCAACAACATCTCCGTTATTGCCGTTGATTATATCGGAGTGTGGCGGTGGAGGTGGAATGGGGGTTTTTGGTGGTGGAAGTGGTGGAGGAGGAGTGAGGAGTCCTCCGGGGTTTTTGGATGAGTTTTTTAGGGATCTTGATTTTGAGAGTTTGGATAGGATTTTGAAAGGGTTGTATGAAGAATTGAGAGGGAGTGTGATGAAGGTTTCTGTTCTTGGAAATTTTCAGGACTCTCTGAGGGCTTTGTTGTTTTTGGTTAGGTTACCGGTTGGTGCGAAGTCTCTTGTTAGTCATGAGTGGTGGATTCCCAAAGGTCTTTATATGAATGGTCGTGCTATTGAAATGACTAGCATTTTGGGTCCCTTTTTTCATATCAGTGCTCTTCCTGATCAAACCTTCTTCAAGAGCCAGCCTGATATTGGGCAACAGTGCTTTTCTGACGCGTCAACTCGGCGACCATCTGACTTATTATCTTCATATACCACCATCAAAACTGTCATGAATACCCTATATGATGGCCTATCTGAAGTACTCCGCAACCTCCTTAGAAGTACAGATACTCGTGAAAATGTACTTGAATATCTTGCAGAGGTGATCAATTTAAATGCTTCTAGGGCTCATATACAGGTTGACCCAATTACTTGTGCAAGTTCAGGCATGTTTGTAAATCTGAGTGCTGTCATGCTTCGCCTCTGTGAACCATTTTTAGATGCAAATTTAACCAAAAGGGATAAAATTGATGCTAAATATGTGCACCACTCAAACCGGTTGAAGCTAAGTGGGTTGACTGCCCTTCACGCATCATCAGAAGAAGTTGCTGAATGGCTTACTAGTAAAAATCCAGCTAAGGCAGGGGAAATGAATCAATATAATGACGGTGAGAAACGTCTGCAACAATCTCAAGAGGCCAGTAGTTCTGGTAGCAATAATGCTAGTGATCTTTCAAATGAAAATTCTGCACGCGCAAAATATTCATTTATATGTGAATGCTTCTTTATGACTGCAAGAGTACTCAACTTGGGGCTTTTAAAAGCATTTTCCGACTTCAAACACTTAGTTCAGGATATTTCTAGAAGCGAAGATACTCTATCTACACTTAAAAACATGCAGGGGCAGTCATCCTCTCCTCAATTGGAATTGGATATAACTCGACTTGAGAAAGAGCTGGAGTTGTATTCGCAGGAAAAGCTTTGTTATGAAGCTCAAATATTGAGGGATAACACACTTATTCAGAATGCACTTTCCTTCTACCGCTTGATGATCGTCTGGTTGGTTGGCTTGGTTGGTGGATTTAAGATGCCTCTACCATCAACCTGCCCAATGGAATTTTCTGCCATGCCTGAACATTTTGTAGAAGATGCCATGGAACTTCTAATATTTGCTTCCCGGATTCCAAGGGCCTTAGATGGAGTAGTGCTGGATGAGTTTATGAACTTTATAATTATGTTCATGGGCAGCCCCGATTTTATCAAAAACCCATATCTGAGAGCCAAGATGGTTGAAGTTCTGAACAGCTGGATGCCTCGTAGGAGTGGGTCATCTGCTACATCTACTCTATTTGAAGGGCACCAACTGTCTCTTGAGTATCTTGTGAGGAATCTTCTGAAACTTTATGTTGACATTGAGTTCACCGGTTCTCACACGCAGTTCTACGACAAGTTTAACATCCGCCATAATATTGCCGAACTTCTTGAATACTTGTGGAATGTCCCTAGTCATCGTAATGCTTGGAGACAGATTGCTAAAGAGGAGGAAAAGGGTGTCTATCTCAATTTCTTAAACTTTCTGATTAATGATAGTATTTATCTTCTTGACGAGAGTCTGAACAAAATTCTTGAGCTAAAAGAATTGGAGGCTGAAATGTCAAATACTGCCGAGTGGGAGCGACGGCCAGTTCAAGAGAGGCAGGAAAGAACTCGGTTATTCCACTCTCAAGAAAATATTATTCGGATAGATATGAAGTTGGCAAATGAAGATGTCAGTATGCTTGCATTTACTTCTGAGCAGATTACTGCTCCATTCCTGCTTCCTGAGATGGTTGATAGAGTGGCCAGTATGCTCAATTACTTTTTGCTGCAATTGGTGGGTCCCCAAAGAAAATCACTCAGTCTGAAAGATCCTGAAAAATATGAATTTCGTCCAAAGCATTTACTGAAACAGATTGTGCATGTGTATGTTCATCTGGCTAGAGGTGACACAAGTTCCATCTTCCCATCTGCTATCTCAAAGGATGGCCGATCATACAATGATCAGTTGTTCAACTCTGCTGCTGATGTCCTTCGTAGAATTGGCGAGGATGGAAGAATTATACAGGAATTTATTCAGCTTGGTGCTAAAGCCAAAATTGCTGCTTCAGAGGCCATGGATGCCGAAGCTACTCTTGGAGAAATACCAGATGAATTCCTGGATCCAATCCAATATACTTTGATGAAAGATCCAGTTATCTTGCCTTCTTCAAGGATCACAGTTGATCGTCCTGTCATCCAGAGGCATCTTCTCAGTGATAGTAGTGACCCATTCAACCGATCTCATCTTACCGCGGATATGCTGATTCCTGATGTTGAACTCAAAGCAAGAATTGAAGAGTTTATCAGGTCGCAAGAAATGAAGAAACACGGTGGTGAAGGCCTAAGCATACAAAGTACTAAGGCCACCATTCAAACCACAGATAGTGCGGAAATGTTGATTGATTAG 3147 0.4239 MATPKPQRTPQEVEDIIIRKIFHVTITATTATTTDSRIVYLELTAAEILSEGKDLLLSRDLMERVLIDRLSGDFSLSGDEASTFQYLVGCYNRAHDEAKKIVNMKDKNLRSEMENVVKQAKKLCVSYCRIHLANPELFASKDSSSDNTRTTSTTSPLLPLIISECGGGGGMGVFGGGSGGGGVRSPPGFLDEFFRDLDFESLDRILKGLYEELRGSVMKVSVLGNFQDSLRALLFLVRLPVGAKSLVSHEWWIPKGLYMNGRAIEMTSILGPFFHISALPDQTFFKSQPDIGQQCFSDASTRRPSDLLSSYTTIKTVMNTLYDGLSEVLRNLLRSTDTRENVLEYLAEVINLNASRAHIQVDPITCASSGMFVNLSAVMLRLCEPFLDANLTKRDKIDAKYVHHSNRLKLSGLTALHASSEEVAEWLTSKNPAKAGEMNQYNDGEKRLQQSQEASSSGSNNASDLSNENSARAKYSFICECFFMTARVLNLGLLKAFSDFKHLVQDISRSEDTLSTLKNMQGQSSSPQLELDITRLEKELELYSQEKLCYEAQILRDNTLIQNALSFYRLMIVWLVGLVGGFKMPLPSTCPMEFSAMPEHFVEDAMELLIFASRIPRALDGVVLDEFMNFIIMFMGSPDFIKNPYLRAKMVEVLNSWMPRRSGSSATSTLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWNVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNTAEWERRPVQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQITAPFLLPEMVDRVASMLNYFLLQLVGPQRKSLSLKDPEKYEFRPKHLLKQIVHVYVHLARGDTSSIFPSAISKDGRSYNDQLFNSAADVLRRIGEDGRIIQEFIQLGAKAKIAASEAMDAEATLGEIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDSSDPFNRSHLTADMLIPDVELKARIEEFIRSQEMKKHGGEGLSIQSTKATIQTTDSAEMLID 1048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00680 1048 MobiDBLite consensus disorder prediction 445 466 - -
Vivi4g00680 1048 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 947 1025 IPR013083 -
Vivi4g00680 1048 Pfam Ubiquitin elongating factor core 270 931 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Vivi4g00680 1048 SUPERFAMILY RING/U-box 940 1020 - -
Vivi4g00680 1048 PANTHER UBIQUITINATION FACTOR E4 3 1023 IPR045132 GO:0000151|GO:0030433|GO:0034450
Vivi4g00680 1048 Coils Coil 526 553 - -
Vivi4g00680 1048 Pfam U-box domain 948 1019 IPR003613 GO:0004842|GO:0016567
Vivi4g00680 1048 SMART Ubox_2 951 1014 IPR003613 GO:0004842|GO:0016567
Vivi4g00680 1048 ProSiteProfiles U-box domain profile. 947 1021 IPR003613 GO:0004842|GO:0016567
Vivi4g00680 1048 FunFam Ubiquitin conjugation factor e4 a 947 1024 - -
Vivi4g00680 1048 CDD RING-Ubox_UBE4A 950 1018 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00680 1 1048 U-box Gene Family AT5G15400 76.163 0.0 1632
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00680 K10597 - gmx:100806175 1729.15