Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00674 ATGGAATCACAGATTAAGCATGCTGTTGTTGTGAAAGTTATGGGACGAACTGGATCGAGAGGGCAGGTGACTCAGGTTAGAGTGAAGTTTTTGGATGATCAGAATCGTCACATCATGAGGAATGTGAAGGGACCAGTTAGGGAGGGAGATATTCTCACCTTACTCGAGTCCGAGAGAGAAGCAAGAAGACTCAGATAA 198 0.4495 MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRHIMRNVKGPVREGDILTLLESEREARRLR 65
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00674 65 Pfam Ribosomal protein S28e 4 64 IPR000289 GO:0003735|GO:0005840|GO:0006412
Vivi4g00674 65 ProSitePatterns Ribosomal protein S28e signature. 56 64 IPR028626 -
Vivi4g00674 65 FunFam 40S ribosomal protein S28 1 65 - -
Vivi4g00674 65 SUPERFAMILY Nucleic acid-binding proteins 2 65 IPR012340 -
Vivi4g00674 65 PANTHER 40S RIBOSOMAL PROTEIN S28 1 65 IPR000289 GO:0003735|GO:0005840|GO:0006412
Vivi4g00674 65 CDD S1_S28E 6 65 IPR000289 GO:0003735|GO:0005840|GO:0006412
Vivi4g00674 65 Gene3D - 1 65 IPR012340 -
Vivi4g00674 65 Hamap 30S ribosomal protein S28e [rps28e]. 1 65 IPR000289 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00674 Vivi-Chr4 14864538 14865576 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00674 1 65 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 90.769 2.30e-36 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00674 K02979 - qsa:O6P43_005779 103.219