Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00665 ATGGATGGATCAGCTGGCCCTGGTGGTGGAAATGTGAACGCATTTCTACGGAATTATAAAATGGGAAAAACACTTGGCATTGGGTCCTTTGGCAAAGTGAAAATTGCAGAGCATGTATTGACCGGTCATAAAGTCGCCATAAAGATTCTCAACCGTCGCAAGATAAAGAACATGGAAATGGAAGAGAAAGTGAGAAGAGAAATCAAAATTTTAAGATTGTTCATGCATCATCACATTATACGCCTTTACGAGGTTGTGGAAACCCCAACAGACATATATGTCGTGATGGAATATGTGAAATCTGGAGAGCTCTTCGATTACATCGTAGAAAAGGGTAGGTTGCAAGAAGATGAAGCCCGCAGTTTCTTTCAGCAGATAATCTCTGGCGTGGAGTACTGTCACAGGAATATGGTAGTTCATAGAGACCTGAAACCTGAGAATTTACTTTTGGACTCAAAATGGAGTGTCAAGATTGCTGATTTTGGCTTGAGCAACATCATGCGTGATGGCCACTTTCTCAAGACAAGTTGTGGAAGCCCTAACTATGCTGCTCCAGAGGTTATCTCTGGGAAATTATATGCTGGACCTGAAGTAGATGTTTGGAGCTGCGGTGTAATTTTATATGCACTTCTCTGTGGCACTCTTCCTTTTGATGATGAAAATATTCCCAACCTCTTTAAAAAAATAAAGGGTGGGATATATACTCTTCCCAGTCATCTATCTCCTGGTGCCAGAGATTTGATACCAAGGCTGCTTGTGGTGGATCCCATGAAAAGGATTACCATACCTGAGATACGTCAACACCAATGGTTCCAACTTCGCCTGCCGCGTTATTTGGCGGTGCCACCACCGGATACACTTCAACAAGCCAAAAAGATTGATGAGGAGATTCTTCAGGAGGTGGTTAATAGGGGATTTGACAGGGATCAATTGGTTGAGTCCCTTAGCAACAGAGTCCAAAATGAGGGTACTGTGACTTACTATTTGTTATTGGACAACCGTTATCGTGTTTCCACCGGCTATCTTGGAGCTGAGTTTCAAGAGACAATGGATCCTAATTTGAACCGTATCAACTCTGAAGTTGTTTCTCCAGCTGGTGGGCACCACTTTTTAGCGTATCAGGGAGTAGGAATGAGGCAACAGTTCCCCGCTGAGAGAAAATGGGCCCTTGGGCTTCAGTCTCGAGCCCAACCTCGAGAAATAATGGTTGAGGTTCTCAAAGCTCTCCAAGGACTGAATGTCTGTTGGAAAAAAATTGGGCACTACAATATGAAGTGCAGATGGGTCGTTGGCATCCCTGGTCATCAGGGAGGAATGGTGAACAATTCCGTGCTTAATAATAATTTCCTTGGAAATGTCGGCATTATTGAGAATGAAGCTGCTCCAAAATCAAGTGTCGTCAAGTTTGAACTGCAGCTGTACAAAACTCAGGAGAAATATCTCCTTGATCTTCAAAGGGTGGAGGGTCCGCAGTTTCTTTTCTTGGATCTTTGTGCTGCCTTCCTTGCGCAGCTTCGTGTTCTTTAA 1527 0.4361 MDGSAGPGGGNVNAFLRNYKMGKTLGIGSFGKVKIAEHVLTGHKVAIKILNRRKIKNMEMEEKVRREIKILRLFMHHHIIRLYEVVETPTDIYVVMEYVKSGELFDYIVEKGRLQEDEARSFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKWSVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRLLVVDPMKRITIPEIRQHQWFQLRLPRYLAVPPPDTLQQAKKIDEEILQEVVNRGFDRDQLVESLSNRVQNEGTVTYYLLLDNRYRVSTGYLGAEFQETMDPNLNRINSEVVSPAGGHHFLAYQGVGMRQQFPAERKWALGLQSRAQPREIMVEVLKALQGLNVCWKKIGHYNMKCRWVVGIPGHQGGMVNNSVLNNNFLGNVGIIENEAAPKSSVVKFELQLYKTQEKYLLDLQRVEGPQFLFLDLCAAFLAQLRVL 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00665 508 Pfam UBA/TS-N domain 293 329 IPR015940 -
Vivi4g00665 508 Gene3D Kinase associated domain 1, KA1 391 506 - -
Vivi4g00665 508 CDD AMPKA_C 385 505 - -
Vivi4g00665 508 Pfam Kinase associated domain 1 466 507 IPR001772 -
Vivi4g00665 508 PANTHER SERINE/THREONINE KINASE 18 336 - -
Vivi4g00665 508 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 292 332 IPR015940 -
Vivi4g00665 508 CDD STKc_AMPK_alpha 16 271 - -
Vivi4g00665 508 SUPERFAMILY KA1-like 328 507 IPR028375 -
Vivi4g00665 508 ProSitePatterns Protein kinases ATP-binding region signature. 25 48 IPR017441 GO:0005524
Vivi4g00665 508 FunFam Non-specific serine/threonine protein kinase 9 100 - -
Vivi4g00665 508 CDD UBA_SnRK1_plant 293 333 - -
Vivi4g00665 508 SUPERFAMILY Protein kinase-like (PK-like) 16 283 IPR011009 -
Vivi4g00665 508 Gene3D Transferase(Phosphotransferase) domain 1 10 349 - -
Vivi4g00665 508 Pfam Protein kinase domain 19 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00665 508 ProSiteProfiles Protein kinase domain profile. 19 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00665 508 SMART serkin_6 19 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00665 508 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Vivi4g00665 508 FunFam Non-specific serine/threonine protein kinase 10 349 - -
Vivi4g00665 508 FunFam Non-specific serine/threonine protein kinase 391 506 - -
Vivi4g00665 508 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 460 507 IPR001772 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00665 Vivi-Chr4 14780657 14788466 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00665 19 271 CBL-interacting serine-threonine protein kinases AT4G24400 51.969 4.46e-92 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Vivi4g00665 Pkinase 4.2e-79 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00665 K07198 - gmx:547544 880.937