Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00664 ATGGCAAGGAAGAGAAAGGTTTCTGAAGTAGTTGAAGAAGGGAGCATGGTTTGGGATGAAATGATGAAAGAAGCTGCCTCCCTAGGAGGAGCTAGACGAGTCCGAAAACGATTTGTCGGTGTTCGACAAAGGCCGTCGGGAAGATGGGTTGCTGAGATCAAAGATACCATTCAAAAGATAAGAGTTTGGTTAGGAACTTTTGATACTGCTGAAGAAGCTGCAAGGGCTTATGATGAGGCTGCTTGTTTGCTTCGCGGCGCGAATACTCGCACGAATTTCTGGCCTTGCTCTCAATCTTCAACTAGTCCTGCTCTTTCTTCCAAGATCACTAATCTTTTACTCCAAAGACTTAAAGAAAGGAACATGAATATGAGTATGAATATGAGTAAGAATATGAATAACTCTTGTTCATCGTTTTCTTCGCCGAAATACACTACTTCCTTGATCAATTCTGAGGAGAGTCGGGAGCACCAACGAGTCAATGAACGACAGGACTATCACGAGACGGATATGCAAAAAGTGGAGGAGGAAACCTATGGAGAAGTGTCAAAAGATTTCTCAATTGATCAATTCACCGATTTTCTCAACGATCACGAAGATTATAGCGCAAGCAACCACGAATTCGTCAACAACACTGCTCAATTCGACTACATTTCAAGTAGTTTCGAATCATGTTTAACCGAAAACAATATCTGCAAAGGAAACGAGGCCAATATCGAATACAAATCAAAATCAAACAATGTGACACAAACTTCAAGTGGTGATAGCAATTCAGAAGATAGTGAAGAAGAAGTCAATAATGAGTTAGGTATCATCGATGTTCCCGATTTTCGTTTTCTCGATGATATTGCTCCTACTAGTTACTACTCACCTTTTGAGATTGCTGAAGAAATGGAAGAGAAAATGGAGACAGAAGATTTTTGTGATGAGCCATCAATGATAAGAGCAGTGATGAAGAGAATGAAGTATGAGAGAAAATTTTCAGCTTCTCTTTATGCATTCAATGGAATACCGGAATGTTTGAAGTTGAAACTTGAATCAGGAAACAATAATATTTCTGAACAATTGAACAATCTTAAGGAATCATGTAGCAAGAACAAGAACAAGATTAAGGTGGATGAGAAAAATGAGCAAGTTTCAATGGAGATTGAGCAATCTTGTTCATTGAGTAGGAATGATAGTGATGTTTTTCTTTGGAATTCACTTGATCTTCCTCCTATTTGTTTTGTTAACTTACTTGAAAATGGTTCTTTTAATTAG 1260 0.3833 MARKRKVSEVVEEGSMVWDEMMKEAASLGGARRVRKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPCSQSSTSPALSSKITNLLLQRLKERNMNMSMNMSKNMNNSCSSFSSPKYTTSLINSEESREHQRVNERQDYHETDMQKVEEETYGEVSKDFSIDQFTDFLNDHEDYSASNHEFVNNTAQFDYISSSFESCLTENNICKGNEANIEYKSKSNNVTQTSSGDSNSEDSEEEVNNELGIIDVPDFRFLDDIAPTSYYSPFEIAEEMEEKMETEDFCDEPSMIRAVMKRMKYERKFSASLYAFNGIPECLKLKLESGNNNISEQLNNLKESCSKNKNKIKVDEKNEQVSMEIEQSCSLSRNDSDVFLWNSLDLPPICFVNLLENGSFN 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00664 419 ProSiteProfiles AP2/ERF domain profile. 37 94 IPR001471 GO:0003700|GO:0006355
Vivi4g00664 419 Coils Coil 342 369 - -
Vivi4g00664 419 FunFam ethylene-responsive transcription factor RAP2-11 36 95 - -
Vivi4g00664 419 MobiDBLite consensus disorder prediction 243 265 - -
Vivi4g00664 419 SUPERFAMILY DNA-binding domain 37 94 IPR016177 GO:0003677
Vivi4g00664 419 SMART rav1_2 37 100 IPR001471 GO:0003700|GO:0006355
Vivi4g00664 419 CDD AP2 36 93 IPR001471 GO:0003700|GO:0006355
Vivi4g00664 419 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 19 328 - -
Vivi4g00664 419 Pfam AP2 domain 37 86 IPR001471 GO:0003700|GO:0006355
Vivi4g00664 419 Gene3D AP2/ERF domain 36 94 IPR036955 GO:0003700|GO:0006355
Vivi4g00664 419 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Vivi4g00664 419 PRINTS Ethylene responsive element binding protein signature 60 76 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00664 Vivi-Chr4 14636098 14637404 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00664 36 93 AP2-EREBP Transcription Factor Family AT1G15360 67.241 1.83e-20 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi4g00664 AP2 8.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00664 K09286 - gmx:100790398 483.026