Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00652 ATGGGACGTTCACCATGTTGTGACAAAGTTGGCTTAAAGAAAGGTCCATGGACTCCAGAAGAAGATCAAAAACTCTTAGCTTATATCGAAGAACACGGTCATGGAAGTTGGCGCGCTTTGCCAGCTAAAGCAGGTCTTCAAAGATGTGGGAAGAGCTGCAGATTAAGATGGACCAATTATCTTAGACCTGATATTAAGAGAGGAAAATTTAGTTTGCAAGAAGAACAAACAATTATTCAACTTCATGCTCTCTTAGGGAACAGGTGGTCAGCTATAGCTACACATTTGTCAAAGAGAACAGATAATGAGATAAAGAATTATTGGAACACACATTTGAAGAAAAGGTTAACAAAAATGGGAATTGATCCAGTTACTCACAAACCTAAAAATGATGCACTTCTTTCATCAAGTGATAGTGTTCATTCAAAAACAGCTTCAAATCTTAGTCACATGGCTCAATGGGAAAGTGCTCGTCTTGAAGCTGAAGCTAGACTTGTTAGAGAATCCAAAATCCGTTCACATAATTCACTTCTTCAAAATAATCATAATCATTTGAAGGCATGGAATATTAATCTTGAATCTCCTACTTCAACTTTATCTTATAATGAGAATGTTCCATCAATTATGAGTAGTGAAGGAATTGGAGAAAAAAACATCAACAATGACAATGAGAAAAACAATAATAATAATAACAACAATGTTAATGATGATGAGAACAATGTTGTTGTGTCTATGATTGAGTTTGTAGGGACAAATTCAAGTTCAATGGTGAAAGAAGAAGGTGGTGATGATCAAGAAAATTGGAAAAGTTATGAAAGTTTTACATCAAATCTTCATCATGAGTTAACTATGTCAATGGATCAAGGTGATGTTATTGCTGAGGAAGGGTTTACTAATCTTTTGCTAAAAACAAATTCTGAAGATTTGAGTTTGTCAGAAAGTGGTGGAGAATCTAACAATGGTGGAAGTGGAAGTGGAAGTGAATTCTATGAAGATAACAATAACTATTGGAATAGTATTCTTAATTTAGTTAATTCTTCTCCTTCTCATTCACCAATGTTTTGA 1065 0.3427 MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLSKRTDNEIKNYWNTHLKKRLTKMGIDPVTHKPKNDALLSSSDSVHSKTASNLSHMAQWESARLEAEARLVRESKIRSHNSLLQNNHNHLKAWNINLESPTSTLSYNENVPSIMSSEGIGEKNINNDNEKNNNNNNNNVNDDENNVVVSMIEFVGTNSSSMVKEEGGDDQENWKSYESFTSNLHHELTMSMDQGDVIAEEGFTNLLLKTNSEDLSLSESGGESNNGGSGSGSEFYEDNNNYWNSILNLVNSSPSHSPMF 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00652 354 CDD SANT 69 112 IPR001005 -
Vivi4g00652 354 SMART sant 66 114 IPR001005 -
Vivi4g00652 354 SMART sant 13 63 IPR001005 -
Vivi4g00652 354 Gene3D - 68 143 - -
Vivi4g00652 354 CDD SANT 16 61 IPR001005 -
Vivi4g00652 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vivi4g00652 354 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 240 - -
Vivi4g00652 354 MobiDBLite consensus disorder prediction 308 327 - -
Vivi4g00652 354 FunFam MYB-related transcription factor 13 66 - -
Vivi4g00652 354 Gene3D - 13 66 - -
Vivi4g00652 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vivi4g00652 354 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vivi4g00652 354 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vivi4g00652 354 FunFam MYB transcription factor 69 116 - -
Vivi4g00652 354 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vivi4g00652 354 MobiDBLite consensus disorder prediction 213 238 - -
Vivi4g00652 354 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vivi4g00652 354 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00652 Vivi-Chr4 14447775 14450021 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00652 1 354 MYB Transcription Factor Family AT3G01140 55.409 9.23e-122 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi4g00652 Myb_DNA-binding 1.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00652 K09422 - gmx:100101835 441.039