Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00648 ATGGAAACTGATTTGCAAGCCGGAGCTAACCACGGATATGAGCTGCTGTGGTTGGTTCTTATTGGACTCATATTTGCTCTTATAATTCAGTCATTAGCTGCAAATCTCGGCGTAACTACCGGCAAGCACCTTTCAGAAATATGTAAAATTGAATATCCGTTAATTGTCAAGTATTGCTTATGGTTATTAGCAGAAGTTGCTGTAATAGCTGCTGACATACCAGAAGTGATTGGGACAGCTTTTGCACTTAATATACTATTCAATATACCATTGTGGGCAGGAGTTCTGTTGACTGGCTGCAGCACTCTCTTGCTTTTGAGTCTGCAGAGATTTGGGGTGAGGAAGTTGGAATTACTGATAACACTCCTAGTATTTGTAATGGCGGCATGTTTCTTTGCTGAAATGAGTTATGTAAATCCCTCCGCTTCTGGTATACTTAAAGGAATGTTTGTGCCTAAACTTTCCGGTGAAGGAGCTGTGGGCGATGCTATTGCCCTTTTGGGTGCCCTTATTATGCCGCACAATCTTTTCCTTCATTCTGCGTTGGTGCTATCTAGAAAAGTACCTAATTCTGGGAGAGGCATCAATGATGCATGTAGATACTTTCTCTATGAGAGTGGTTTCGCTTTGTTTGTTGCGTTTTTAATCAATGTTGCAATGATTTCTGTGTCGGGCGCAATTTGCTCCGCCAATGACCTTTCTAAAGAAAATGCTGAACACTGCAATGACCTTACTATAAATTCTGCTTCTTTTCTTCTCAAGAATGTGTTGGGACGATCAAGTTCAACCATTTATGCCATAGCACTGCTAGCCTCGGGTCAAAGTTCTACCATCACAGGAACCTATGCAGGACAATACATTATGCAGGGTTTTTTGAACATAAGGATGAAAAGGTGGAAAAGGAATTTGATGACTAGGTTCATTGCCATAGGACCTAGTCTTGTTGTTACCATTGTTGGCGGTTCTTCTGGCTCTAGTCAGCTTATCATCATCGCATCGATGATACTTTCTTTTGAGCTTCCATTTGCTTTAATTCCACTCCTAAAATTTAGCAGTAGCAGTACCAAGATGGGAATTCACAAGAATTCAAGGACTATCATAACTATATCATGGATATTAGGCGCTGGGATCATTGGTATCAATGTATACTACCTCAGTACTACCTTTGTGAAGTGGTTAATTCATAGTAATCTACCAAAAGTGGCAAATGTGTTCATTGGCATCATAGTGTTTCCTCTAATGGCAATTTATATTGTCTCAGTTATCTACCTTACCTTCAGAAAAGACATTGTTCCGATAGTTATGGAGACGAAGAATGATACAGCAATGCAAAGCCAAGTGGAAAAGGGTGTTTTGGATCATGATCGGTTGGAATTGAGCCATGTTCCCTATAGAGAAGACTTAGCTGATATCCAACTTCCAAATTAA 1428 0.4013 METDLQAGANHGYELLWLVLIGLIFALIIQSLAANLGVTTGKHLSEICKIEYPLIVKYCLWLLAEVAVIAADIPEVIGTAFALNILFNIPLWAGVLLTGCSTLLLLSLQRFGVRKLELLITLLVFVMAACFFAEMSYVNPSASGILKGMFVPKLSGEGAVGDAIALLGALIMPHNLFLHSALVLSRKVPNSGRGINDACRYFLYESGFALFVAFLINVAMISVSGAICSANDLSKENAEHCNDLTINSASFLLKNVLGRSSSTIYAIALLASGQSSTITGTYAGQYIMQGFLNIRMKRWKRNLMTRFIAIGPSLVVTIVGGSSGSSQLIIIASMILSFELPFALIPLLKFSSSSTKMGIHKNSRTIITISWILGAGIIGINVYYLSTTFVKWLIHSNLPKVANVFIGIIVFPLMAIYIVSVIYLTFRKDIVPIVMETKNDTAMQSQVEKGVLDHDRLELSHVPYREDLADIQLPN 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00648 475 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 2 435 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi4g00648 475 Hamap Divalent metal cation transporter MntH [mntH]. 1 389 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi4g00648 475 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 2 355 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi4g00648 475 Pfam Natural resistance-associated macrophage protein 2 363 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi4g00648 475 NCBIfam Nramp family divalent metal transporter 5 352 - -
Vivi4g00648 475 PRINTS Natural resistance-associated macrophage protein signature 88 107 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi4g00648 475 PRINTS Natural resistance-associated macrophage protein signature 273 292 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi4g00648 475 PRINTS Natural resistance-associated macrophage protein signature 60 86 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi4g00648 475 PRINTS Natural resistance-associated macrophage protein signature 163 186 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi4g00648 475 PRINTS Natural resistance-associated macrophage protein signature 333 352 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi4g00648 475 PRINTS Natural resistance-associated macrophage protein signature 301 318 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi4g00648 475 PRINTS Natural resistance-associated macrophage protein signature 113 134 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00648 Vivi-Chr4 14285020 14288199 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00648 2 475 Inorganic Solute Cotransporters AT1G15960 59.072 0.0 573
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00648 K21398 - gmx:100787785 766.533