Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00647 ATGGAGCAACAAAATCAAGTTAGGGAAACATCCTCATATCATGAGGAGACTCCGAAATCTGGATGGAAAAATTTCTTGCCGTATATTGGTCCTGGTTTTCTTGTTTCCTTGGCTTATCTTGATCCTGGAAACATGGAAACTGATTTGCAAGCCGGAGCTAACCACGGATATGAGCTGCTGTGGTTGGTTCTTATTGGACTCATATTTGCTCTTATAATTCAGTCATTAGCTGCAAATCTCGGCGTAACTACCGGCAAGCACCTTTCAGAAATATGTAAAATTGAATATCCGTTAATTGTCAAGTATTGCTTATGGTTATTAGCAGAAGTTGCTGTAATAGCTGCTGACATACCAGAAGTGATTGGGACAGCTTTTGCACTTAATATACTATTCAATATACCATTGTGGGCAGGAGTTCTGTTGACTGGCTGCAGCACTCTCTTGCTTTTGAGTCTGCAGAGATTTGGGGTGAGGAAGTTGGAATTACTGATAACACTCCTAGTATTTGTAATGGCGGCATGTTTCTTTGCTGAAATGAGTTATGTAAATCCCTCCGCTTCTGGTATACTTAAAGGAATGTTTGTGCCTAAACTTTCCGGTGAAGGAGCTGTGGGCGATGCTATTGCCCTTTTGGGTGCCCTTATTATGCCGCACAATCTTTTCCTTCATTCTGCGTTGGTGCTATCTAGAAAAGTACCTAATTCTGGGAGAGGCATCAATGATGCATGTAGATACTTTCTCTATGAGAGTGGTTTCGCTTTGTTTGTTGCGTTTTTAATCAATGTTGCAATGATTTCTGTGTCGGGCGCAATTTGCTCCGCCAATGACCTTTCTAAAGAAAATGCTGAACACTGCAATGACCTTACTATAAATTCTGCTTCTTTTCTTCTCAAGAATGTGTTGGGACGATCAAGTTCAACCATTTATGCCATAGCACTGCTAGCCTCGGGTCAAAGTTCTACCATCACAGGAACCTATGCAGGACAATACATTATGCAGGGTTTTTTGAACATAAGGATGAAAAGGTGGAAAAGGAATTTGATGACTAGGTTCATTGCCATAGGACCTAGTCTTGTTGTTACCATTGTTGGCGGTTCTTCTGGCTCTAGTCAGCTTATCATCATCGCATCGATGATACTTTCTTTTGAGCTTCCATTTGCTTTAATTCCACTCCTAAAATTTAGCAGTAGCAGTACCAAGATGGGAATTCACAAGAATTCAAGGACTATCATAACTATATCATGGATATTAGGCGCTGGGATCATTGGTATCAATGTATACTACCTCAGTACTACCTTTGTGAAGTGGTTAATTCATAGTAATCTACCAAAAGTGGCAAATGTGTTCATTGGCATCATAGTGTTTCCTCTAATGGCAATTTATATTGTCTCAGTTATCTACCTTACCTTCAGAAAAGACATTGTTCCGATAGTTATGGAGACGAAGAATGATACAGCAATGCAAAGCCAAGTGGAAAAGGGTGTTTTGGATCATGATCGGTTGGAATTGAGCCATGTTCCCTATAGAGAAGACTTAGCTGATATCCAACTTCCAAATTAA 1560 0.4013 MEQQNQVRETSSYHEETPKSGWKNFLPYIGPGFLVSLAYLDPGNMETDLQAGANHGYELLWLVLIGLIFALIIQSLAANLGVTTGKHLSEICKIEYPLIVKYCLWLLAEVAVIAADIPEVIGTAFALNILFNIPLWAGVLLTGCSTLLLLSLQRFGVRKLELLITLLVFVMAACFFAEMSYVNPSASGILKGMFVPKLSGEGAVGDAIALLGALIMPHNLFLHSALVLSRKVPNSGRGINDACRYFLYESGFALFVAFLINVAMISVSGAICSANDLSKENAEHCNDLTINSASFLLKNVLGRSSSTIYAIALLASGQSSTITGTYAGQYIMQGFLNIRMKRWKRNLMTRFIAIGPSLVVTIVGGSSGSSQLIIIASMILSFELPFALIPLLKFSSSSTKMGIHKNSRTIITISWILGAGIIGINVYYLSTTFVKWLIHSNLPKVANVFIGIIVFPLMAIYIVSVIYLTFRKDIVPIVMETKNDTAMQSQVEKGVLDHDRLELSHVPYREDLADIQLPN 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00647 519 PRINTS Natural resistance-associated macrophage protein signature 132 151 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi4g00647 519 PRINTS Natural resistance-associated macrophage protein signature 377 396 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi4g00647 519 PRINTS Natural resistance-associated macrophage protein signature 104 130 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi4g00647 519 PRINTS Natural resistance-associated macrophage protein signature 207 230 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi4g00647 519 PRINTS Natural resistance-associated macrophage protein signature 157 178 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi4g00647 519 PRINTS Natural resistance-associated macrophage protein signature 317 336 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi4g00647 519 PRINTS Natural resistance-associated macrophage protein signature 345 362 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi4g00647 519 Pfam Natural resistance-associated macrophage protein 46 407 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi4g00647 519 Hamap Divalent metal cation transporter MntH [mntH]. 10 433 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi4g00647 519 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 9 479 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi4g00647 519 NCBIfam Nramp family divalent metal transporter 30 396 - -
Vivi4g00647 519 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 24 399 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00647 Vivi-Chr4 14284812 14288199 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00647 19 519 Inorganic Solute Cotransporters AT1G15960 59.681 0.0 620
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00647 K21398 - gmx:100787785 816.994