Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00645 ATGATGCATCAAGAACAACAAGTGAGTAATGGTAACAACAACCCCCTGGTGGCAGTAAATGTGACACCTGCTGGCACATCATCTCCTAACCATGACTCTTCGAAGACACCAGGATGGAAAAGGTTCTTTACATATGTTGGTCCGGGGTTTCTTGTCTCTTTGGCGTACCTAGATCCTGGAAATTTGGAAACTGATTTGCAAGCTGGGGCGAATCATGGTTATGAGCTGTTGTGGATCATATTTATTGGACTTATATTTGCCCTTCTGATTCAATCCTTAGCTGCTAATCTTGGAGTATGCACCGGAAAACACCTTGCAGAAATCTGTAAGGCTGAGTATCCATTATTCATGAAGTACTGTTTATGGATACTAGCTGAGCTTGCTGTAATAGCATCAGACATACCTGAAGTGATTGGGACTGCATTTGCTCTTAACATACTATTTCATATTCCAGTATGGGGAGGAGTTTTGTTGACGGGATGTAGCACGCTCTTGTTTTTGGGCCTGCAAAGATTTGGAGTAAGGAAATTGGAACTTCTGATATCAGTTTTAGTATTTATAATGGCTGGCTGTTTTTTCGGAGAAATGAAATACCTAAAACCCCCTGCATCTGGTGTAGTTGAAGGGGTATTTATCCCTAAACTCAATGGAAATGGCGCTGTAGCCGACGCTATTGCCCTCTTAGGAGCTCTAATCATGCCTCACAATCTTTTCCTCCACTCTGCTCTAGTGTTATCAAGAAAAATACATGGTTCTGAGCGTGGTGTCAATGATGCATGCAGATACTTTCTCGTTGAAAGTGGTTTTGCTTTGTTTGTCGCATTTCTAATCAATATTGCAGTGATTTCCGTGTCTGCCACTGTTTGTACTGCCAAAGACATTACTGCGGAAAATGTTAAAAGTTGCAGTGATCTTACCCTTAACTCGGCTTCTTTTCTTCTTAAGAATGTATTGGGACGTTCCAGCTCAGTCATATATGCAATAGCCTTGCTAGCTTCTGGACAAAGTTCTTCTATAACTGGGACATATGCAGGCCAATTTATCATGCAGGGTTTTCTGGACTTAAAGATGGAGAAATGGATTAGGAACTTGTTGACAAGGATTGTTGCCATTGCCCCCAGTCTCGTTGTCGCTATCATTGGTGGCTCTTCTGGAGTTGGAAGACTTATCATCATTGCCTCTATGATTCTTTCTTTTGAAATCCCGTTTGCTTTAATACCACTGCTGAAGTTTAGCAGCAGCAGCATCAAAATGGGAACTCACAAGAACTCTATGATTGTTATTGTCATCTCATGGATACTAGGCTTGGGCGTCATTGGTATAAAAGTCTACTATCTCATTACTGCTTTTGTGGGTTGGATAACTCACAACGGTCTGCCAAAAGTGGCAAACGTTTCCATTGGGATTATAGTGTTTCCGTTAATGGCACTATACATTGTCTCGGTAATCTATCTAACATTCAGAAAAGACAGAGTTAAGACATTTGTTGAGGTTAAGGATGACCCAGTAATGCAAGCCCATATGGAAAAAGGATTTGGAAACGTTGGTCAGGAAGAGTTGAGTAATGCTCCTTACAGAGAAGTTGGTCAGGTAGAGTTGAGTAAAATATAG 1611 0.4122 MMHQEQQVSNGNNNPLVAVNVTPAGTSSPNHDSSKTPGWKRFFTYVGPGFLVSLAYLDPGNLETDLQAGANHGYELLWIIFIGLIFALLIQSLAANLGVCTGKHLAEICKAEYPLFMKYCLWILAELAVIASDIPEVIGTAFALNILFHIPVWGGVLLTGCSTLLFLGLQRFGVRKLELLISVLVFIMAGCFFGEMKYLKPPASGVVEGVFIPKLNGNGAVADAIALLGALIMPHNLFLHSALVLSRKIHGSERGVNDACRYFLVESGFALFVAFLINIAVISVSATVCTAKDITAENVKSCSDLTLNSASFLLKNVLGRSSSVIYAIALLASGQSSSITGTYAGQFIMQGFLDLKMEKWIRNLLTRIVAIAPSLVVAIIGGSSGVGRLIIIASMILSFEIPFALIPLLKFSSSSIKMGTHKNSMIVIVISWILGLGVIGIKVYYLITAFVGWITHNGLPKVANVSIGIIVFPLMALYIVSVIYLTFRKDRVKTFVEVKDDPVMQAHMEKGFGNVGQEELSNAPYREVGQVELSKI 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00645 536 PRINTS Natural resistance-associated macrophage protein signature 149 168 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi4g00645 536 PRINTS Natural resistance-associated macrophage protein signature 174 195 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi4g00645 536 PRINTS Natural resistance-associated macrophage protein signature 394 413 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi4g00645 536 PRINTS Natural resistance-associated macrophage protein signature 121 147 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi4g00645 536 PRINTS Natural resistance-associated macrophage protein signature 334 353 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi4g00645 536 PRINTS Natural resistance-associated macrophage protein signature 362 379 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi4g00645 536 PRINTS Natural resistance-associated macrophage protein signature 224 247 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi4g00645 536 NCBIfam Nramp family divalent metal transporter 47 413 - -
Vivi4g00645 536 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 41 415 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi4g00645 536 Hamap Divalent metal cation transporter MntH [mntH]. 29 450 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi4g00645 536 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 34 493 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi4g00645 536 Pfam Natural resistance-associated macrophage protein 63 424 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00645 Vivi-Chr4 14205968 14215249 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00645 26 533 Inorganic Solute Cotransporters AT1G15960 57.364 0.0 597
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00645 K21398 - gmx:100787785 816.994