Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00637 ATGAACAACAACATGGCTGATTCTAACCCCATTCACGATGACCCATCAACGATTCCATCGCTCCCAACCGATCAACCTAATGATGCAGGAAATGATGTGAAATTGTGTTCTAAGGATCAGAGAGATGCTCTACCAGGTGAGCCCAAGTGTACTGTTTGTGGCCGGTATGGCGAGTATATATGCGATGAAACTGACGACGATGTTTGTAGTTTGGAATGTAAACAGTTAGTACTATGTCGAATTTCTAAATCGTCGTCGTGTGTTGGAGATCTTCCACCGCCTAAAAAGCTACCTGCAGCCGATGAGTGTTTTTATGTTAGAGATACCGATTACGAATCTGGTATGCTGTTATCGAGAGGTGATCAGGTTCAGGCTGAATTGCTTAGGAAAAAACTCGACATTCACGTGAAGGGTGTTGTATCGGCACCGGTTTTGTCGTTTGCTTCCTGTAACCTTCCTGATAAACTCCTGCATAACATCGAAGGAGCTGGATATGAGATGCCTACGCCTGTCCAAATGCAAGCAATCCCGGCTGCTTCGATGGGGAAGAACATGCTTGTTTTGGCCGATACCGGATCGGGAAAGTCTGCTTCGTTTCTTATTCCGATAATTTCTTGTTGCGTGAGTCATCGTTTGACTTATGTTTCGGATAAGAAAAAGCCTTTAGCTATGGTGTTAACGCCTACAAGAGAGCTCAGTATACAGGTTGAAGAGCATGCGAAATTGCTCGGAAAAGGATTGCCGTTTAAAACCGCACTTGTGGTTGGTGGCGATGCAATGGCTAGACAAATCTACCGCATTCAACAAGGTGTCGAATTGATTGTCGGAACGCCAGGAAGGCTCGTTGATCTTTTAACAAAGCACGAGATTGACTTAGACGACGTAACAACTTTTGTTGTCGATGAGGTGGATTGCATGCTTCAAAGTGGTTTTCGAGATCAGGTTTTACAGATATTCACGGCTTTGTCACAACCTCAGGTCTTAATGTATTCGGCAACAATGTCTGATTCTTTAGAGAAAATGGCGAACTCTCTCGCAAAAGATACCGTGATTATAACCGTCGGCGAACCTAACAGACCAAATAAGGCCGTGAAGCAGCTAGCTATTTGGGTCGAGTCGAAACAAAAGAAGCAGAAACTGTTTGACATTTTAACAAGCCAGAAACATTTTAAGCCACCTGTCGTAATATACGTCGCCTCGAGACTCGGGGCAGATCTACTTGCAAATGCAATTACAGTTTCAACAGGAACGAAAGCCGTTTCAATTCACGGCGAGAAGTCAATGACTGAAAGGCGGGAAATAATGCAGTCGTTTATGGTCGGCGAGTTCCCGGTGGTTGTGGCTACCGGAGTTTTGGGTAGGGGGGTCGATCTATTGGGTGTAAGACAAGTAATTGTATTCGACATGCCGAATTCCATTAAGGAGTATGTGCATCAAATAGGAAGGGCTTCTAGAATGGGAGAGGAAGGTCAAGCCATAGTTTTTGTAAATGATGAGAATAAGAATGTTTTAGCAGAGTTAGTCGATGTATTAAAGTCGGGCGCGGCGGCTATACCTAGGGAGCTTATCAATTCACAATACGCCACAGGATTTTTCTCAGGGGGCAAGGGTTCAAAGAAGAGAAAGCATAGATGA 1635 0.444 MNNNMADSNPIHDDPSTIPSLPTDQPNDAGNDVKLCSKDQRDALPGEPKCTVCGRYGEYICDETDDDVCSLECKQLVLCRISKSSSCVGDLPPPKKLPAADECFYVRDTDYESGMLLSRGDQVQAELLRKKLDIHVKGVVSAPVLSFASCNLPDKLLHNIEGAGYEMPTPVQMQAIPAASMGKNMLVLADTGSGKSASFLIPIISCCVSHRLTYVSDKKKPLAMVLTPTRELSIQVEEHAKLLGKGLPFKTALVVGGDAMARQIYRIQQGVELIVGTPGRLVDLLTKHEIDLDDVTTFVVDEVDCMLQSGFRDQVLQIFTALSQPQVLMYSATMSDSLEKMANSLAKDTVIITVGEPNRPNKAVKQLAIWVESKQKKQKLFDILTSQKHFKPPVVIYVASRLGADLLANAITVSTGTKAVSIHGEKSMTERREIMQSFMVGEFPVVVATGVLGRGVDLLGVRQVIVFDMPNSIKEYVHQIGRASRMGEEGQAIVFVNDENKNVLAELVDVLKSGAAAIPRELINSQYATGFFSGGKGSKKRKHR 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00637 544 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 140 525 - -
Vivi4g00637 544 Gene3D - 29 87 - -
Vivi4g00637 544 CDD SF2_C_DEAD 364 496 - -
Vivi4g00637 544 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 363 526 IPR001650 -
Vivi4g00637 544 MobiDBLite consensus disorder prediction 1 27 - -
Vivi4g00637 544 Gene3D - 116 353 IPR027417 -
Vivi4g00637 544 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 292 501 IPR027417 -
Vivi4g00637 544 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 145 173 IPR014014 GO:0003724
Vivi4g00637 544 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 134 355 IPR027417 -
Vivi4g00637 544 Gene3D - 354 528 IPR027417 -
Vivi4g00637 544 Pfam DEAD/DEAH box helicase 169 340 IPR011545 GO:0003676|GO:0005524
Vivi4g00637 544 Pfam Helicase conserved C-terminal domain 376 487 IPR001650 -
Vivi4g00637 544 Pfam HIT zinc finger 48 74 IPR007529 -
Vivi4g00637 544 SMART ultradead3 164 367 IPR014001 -
Vivi4g00637 544 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 176 352 IPR014001 -
Vivi4g00637 544 SMART helicmild6 405 487 IPR001650 -
Vivi4g00637 544 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00637 Vivi-Chr4 14111591 14114203 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00637 146 507 Eukaryotic Initiation Factors Gene Family AT1G72730 31.733 2.15e-51 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00637 K19466 - gmx:100781473 808.905