Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00629 ATGTACTACCATCAACATCAAGAAGCAAGGAACATGCATGCTTTAAGGATGCAAATGCAAGAAAGAGGAAATGGAAGTATAGATACTGGACTTGTTCTCTCAACTGATGCTAAGCCAAGACTAAAATGGACACCGGACCTTCATGAACGTTTCATTGAAGCCGTCACTCAACTTGGAGGAGCAGATAAAGCTACACCAAAAACAGTATTGAAACTTATGGGAATTCCTGGACTTACATTATATCATTTAAAGAGTCACCTACAGAAGTATAGGATCAGTAAGAGTACAAATGGACAAACTAATACTTTCAACAATAAAATTGTAGCAACACCAACCATAGAAGTGGAAAGCAGAATGCCAGCATCAAGTGGAATTCATATGAAAGATTTAAGCATAGGACTCCAAACAAACAAAAATTCAGATATAAATGAAGCATTGAATATGCAAATTGAAGTGCAAAGAAGACTACACGAGCAACTCGAGGTACAACGACACTTACAACTACGAATAGAGGCTCAAGGAAAGTACCTTCATTCAGTGCTTGAAAAAGCCAAGGAAACATTAGGAAAACAAAACCTAGGTACTATGGGACTTGATGCTGCAAAGGTTCAACTATCTGAGTTAGCATCAAGAGTATCCAATGAAAGTCTTGATTCTAGGTTTTCACAAATAAAAGAATTGAATATGATTTTGCCTCAACAAACTCTAGAAGGTGAAGCCATTGATTATTCAATGGGAAGTTTCTTAGCCAATAGTGAGGATGCTCAAAGAGACCAAAAAATGAATAACAATGGCATGAATTTGAGAGCATATAATGGCACATTTTGTGATGAAAAGAAGGAGAATATGATGTTTCTTTCCTCATCAAATGATAAAGTATTAAAGGGACCGAACGGAGTATCAGGAAATACTTCTAGCCTCTTATCCATGAATATAGGAAGAGTTCATGAAGAAGAATTTATTTTGAGGAGAACTATTTCAAAGGAAGATTTAAAGGGTGAAGAAGGGAAAAGAAGAAAAAGTAATGAAACTAGTGGAATGCAACTTAAACTTAATAGTGAAAAAATTTCTCAAGATTATAGACTAGCTAACTTTGAAGTGAAACTAGACTTGAATTCTCATGATAACAATGATGCTTCTTCTCACTGCCAAAAAATTGATTTGAATGGTTTCAGCTGGAATTGCTAG 1188 0.3544 MYYHQHQEARNMHALRMQMQERGNGSIDTGLVLSTDAKPRLKWTPDLHERFIEAVTQLGGADKATPKTVLKLMGIPGLTLYHLKSHLQKYRISKSTNGQTNTFNNKIVATPTIEVESRMPASSGIHMKDLSIGLQTNKNSDINEALNMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLHSVLEKAKETLGKQNLGTMGLDAAKVQLSELASRVSNESLDSRFSQIKELNMILPQQTLEGEAIDYSMGSFLANSEDAQRDQKMNNNGMNLRAYNGTFCDEKKENMMFLSSSNDKVLKGPNGVSGNTSSLLSMNIGRVHEEEFILRRTISKEDLKGEEGKRRKSNETSGMQLKLNSEKISQDYRLANFEVKLDLNSHDNNDASSHCQKIDLNGFSWNC 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00629 395 NCBIfam myb-like DNA-binding domain, SHAQKYF class 38 93 IPR006447 GO:0003677
Vivi4g00629 395 SUPERFAMILY Homeodomain-like 37 93 IPR009057 -
Vivi4g00629 395 MobiDBLite consensus disorder prediction 331 350 - -
Vivi4g00629 395 Coils Coil 143 163 - -
Vivi4g00629 395 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 10 266 IPR044848 GO:0003700
Vivi4g00629 395 FunFam Myb family transcription factor 37 95 - -
Vivi4g00629 395 Pfam Myb-like DNA-binding domain 40 91 IPR001005 -
Vivi4g00629 395 Gene3D - 37 95 - -
Vivi4g00629 395 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 35 95 IPR017930 -
Vivi4g00629 395 Pfam MYB-CC type transfactor, LHEQLE motif 141 186 IPR025756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00629 Vivi-Chr4 13889329 13892305 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00629 70 394 G2-like Transcription Factor Family AT3G04030 46.746 9.40e-80 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vivi4g00629 Myb_DNA-binding 2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00629 - - psat:127126075 686.026