Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00628 ATGTACTACCATCAACATCAAGAAGCAAGGAACATGCATGCTTTAAGGATGCAAATGCAAGAAAGAGGAAATGGAAGTATAGATACTGGACTTGTTCTCTCAACTGATGCTAAGCCAAGACTAAAATGGACACCGGACCTTCATGAACGTTTCATTGAAGCCGTCACTCAACTTGGAGGAGCAGATAAAGCTACACCAAAAACAGTATTGAAACTTATGGGAATTCCTGGACTTACATTATATCATTTAAAGAGTCACCTACAGAAGTATAGGATCAGTAAGAGTACAAATGGACAAACTAATACTTTCAACAATAAAATTGCAACACCAACCATAGAAGTGGAAAGCAGAATGCCAGCATCAAGTGGAATTCATATGAAAGATTTAAGCATAGGACTCCAAACAAACAAAAATTCAGATATAAATGAAGCATTGAATATGCAAATTGAAGTGCAAAGAAGACTACACGAGCAACTCGAGGTACAACGACACTTACAACTACGAATAGAGGCTCAAGGAAAGTACCTTCATTCAGTGCTTGAAAAAGCCAAGGAAACATTAGGAAAACAAAACCTAGGTACTATGGGACTTGATGCTGCAAAGGTTCAACTATCTGAGTTAGCATCAAGAGTATCCAATGAAAGTCTTGATTCTAGGTTTTCACAAATAAAAGAATTGAATATGATTTTGCCTCAACAAACTCTAGAAGGTGAAGCCATTGATTATTCAATGGGAAGTTTCTTAGCCAATAGTGAGGATGCTCAAAGAGACCAAAAAATGAATAACAATGGCATGAATTTGAGAGCATATAATGGCACATTTTGTGATGAAAAGAAGGAGAATATGATGTTTCTTTCCTCATCAAATGATAAAGTATTAAAGGGACCGAACGGAGTATCAGGAAATACTTCTAGCCTCTTATCCATGAATATAGGAAGAGTTCATGAAGAAGAATTTATTTTGAGGAGAACTATTTCAAAGGAAGATTTAAAGGGTGAAGAAGGGAAAAGAAGAAAAAGTAATGAAACTAGTGGAATGCAACTTAAACTTAATAGTGAAAAAATTTCTCAAGATTATAGACTAGCTAACTTTGAAGTGAAACTAGACTTGAATTCTCATGATAACAATGATGCTTCTTCTCACTGCCAAAAAATTGATTTGAATGGTTTCAGCTGGAATTGCTAG 1185 0.3544 MYYHQHQEARNMHALRMQMQERGNGSIDTGLVLSTDAKPRLKWTPDLHERFIEAVTQLGGADKATPKTVLKLMGIPGLTLYHLKSHLQKYRISKSTNGQTNTFNNKIATPTIEVESRMPASSGIHMKDLSIGLQTNKNSDINEALNMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLHSVLEKAKETLGKQNLGTMGLDAAKVQLSELASRVSNESLDSRFSQIKELNMILPQQTLEGEAIDYSMGSFLANSEDAQRDQKMNNNGMNLRAYNGTFCDEKKENMMFLSSSNDKVLKGPNGVSGNTSSLLSMNIGRVHEEEFILRRTISKEDLKGEEGKRRKSNETSGMQLKLNSEKISQDYRLANFEVKLDLNSHDNNDASSHCQKIDLNGFSWNC 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00628 394 NCBIfam myb-like DNA-binding domain, SHAQKYF class 38 93 IPR006447 GO:0003677
Vivi4g00628 394 SUPERFAMILY Homeodomain-like 37 93 IPR009057 -
Vivi4g00628 394 FunFam Myb family transcription factor 37 95 - -
Vivi4g00628 394 Pfam Myb-like DNA-binding domain 40 91 IPR001005 -
Vivi4g00628 394 MobiDBLite consensus disorder prediction 330 349 - -
Vivi4g00628 394 Pfam MYB-CC type transfactor, LHEQLE motif 140 185 IPR025756 -
Vivi4g00628 394 Coils Coil 142 162 - -
Vivi4g00628 394 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 35 95 IPR017930 -
Vivi4g00628 394 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 10 265 IPR044848 GO:0003700
Vivi4g00628 394 Gene3D - 37 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00628 Vivi-Chr4 13889329 13892305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00628 70 393 G2-like Transcription Factor Family AT3G04030 47.305 2.01e-81 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vivi4g00628 Myb_DNA-binding 2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00628 - - psat:127126075 681.404