Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00622 ATGGATATCTGCCACAATGCATCACTTTCTACCCTTGATGATCTTTTCCCTCCTCACAACATGGAAGTGGATTTTGGGATGGAGTGGTTATCAGTATTTGTTGAAGAATGTTTTTCAAGTCAATCTTTTTCTAGTCCTCAAATTCAAACAACAAATACCAACAAAAATCCTTCTAACACAATACAAAAACCTCAACAACAACAAAATCAATATTATTTGCATAATTTTGTTGTTCCTAGAAAACCAAGAAGTAAAAGAAAAAGACTTTCATCTCCAAGAAAAATTTGGTCCCATTCATATCCTCCTCTTTTAAAACAAACATATTGGTTAGTCAAAAGCGAACTTGTTAGCCCTAATTTAAAAATCGAGTCAGAAGTCTCTACAGTTACGTGCAGAGATACTTCAGTTTATCGGAAAGACAAAAAGAATCAAAATGATGATGATGATGAGAAGGAAGATGATGGAAATGCAAGAAGGTGTAGTCATTGTTTGTCACAAAAGACACCACAATGGAGGGCAGGGCCATTGGGGCCAAAGACATTATGCAATGCATGTGGTGTGAGGTATAAGTCTGGTAGGTTGTTGCCAGAGTATAGGCCAGCAAAGAGTCCTACTTTTGTTAGTTACTTGCATTCTAATTCACATAAAAAAGTTTTGAAGATGAGAATGCAATCTAATTAA 681 0.3554 MDICHNASLSTLDDLFPPHNMEVDFGMEWLSVFVEECFSSQSFSSPQIQTTNTNKNPSNTIQKPQQQQNQYYLHNFVVPRKPRSKRKRLSSPRKIWSHSYPPLLKQTYWLVKSELVSPNLKIESEVSTVTCRDTSVYRKDKKNQNDDDDEKEDDGNARRCSHCLSQKTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVLKMRMQSN 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00622 226 PANTHER GATA TRANSCRIPTION FACTOR 10 226 - -
Vivi4g00622 226 MobiDBLite consensus disorder prediction 45 66 - -
Vivi4g00622 226 SMART GATA_3 154 208 IPR000679 GO:0006355|GO:0043565
Vivi4g00622 226 Gene3D - 150 224 IPR013088 GO:0006355|GO:0008270
Vivi4g00622 226 Pfam GATA zinc finger 160 194 IPR000679 GO:0006355|GO:0043565
Vivi4g00622 226 ProSiteProfiles GATA-type zinc finger domain profile. 154 190 IPR000679 GO:0006355|GO:0043565
Vivi4g00622 226 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 156 217 - -
Vivi4g00622 226 FunFam GATA transcription factor 149 226 - -
Vivi4g00622 226 CDD ZnF_GATA 159 206 IPR000679 GO:0006355|GO:0043565
Vivi4g00622 226 ProSitePatterns GATA-type zinc finger domain. 160 185 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00622 Vivi-Chr4 13763713 13764758 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00622 14 224 C2C2-Gata Transcription Factor Family AT4G32890 40.271 3.89e-43 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vivi4g00622 GATA 1.5e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00622 - - vvo:131598845 402.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g04271 4 168901346 168904667 Vivi4g00622 4 13763713 13764758 PCT