Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00553 ATGGATAGACTCATAAGGTTAGATCCATCAAACATAGTACTAATAAGAGTTGAACAAGGACAAAAATGTCAAGGAAAAATAACCTTAAACAATGTCATGTACACTATGCCAGTTGCATTTAGGATTCAACCACTCATCAAAACTAGATACACTATCAAACCTCAATCAGGAATCATTTCACCATTAGCTTCACTTGTGATAGAGATAACATATCATCCTCCACAGCAACAAGGTTCAAGTAATCTTCCTCACTCTTTTCCTTTTTCAGATGATTCATTTCTTCTACACAGTGTTCTTGCTCCTGGTGCAGCCATCAAAGAGCCTTCATCCATGTTTGATTCTGTCCCAAGTGATTGGTTCACTACTAAGAAAAAACAAGTTTTCATTGATAGTGCAATCAAAGTCATGTTTGTAGGGTCACAAATTTTGACTCAACTTGTAGAAGATGGGAATTCAATGGATGATATAAGAGAAGTGCTTGAAAAGAGTGATCCTTTATGGGAATCTGTTAACTCTAAAGACTCCAAAGGACAAACTTTGCTTCATTTGGCTATTTCGAAAACAAGACCTGATCTTGTTCAATTGATCCTTGAATTCAAGCCTGATATTGAGGCTACAAATAGCGTTGGATCGACTCCGCTTGAGGCCGCGTCTTCCTCGGGCGAATCGTTGATTGTCGAGCTTCTTTTAGCTCATAAGGCCAACACAGAAGGATCAGAATCTTCGATTTTTCGACCGATTCATCACGCGTCGAGAGAAGGACACATGGAGATTCTCAGGCTTCTTTTGCTCAAAGGTGCAAAAGTTGATTCATTGACAAAAGATGGTAACACTTCTTTACACTTAGCTGTTGAAGAAAAAAGAAGAGACTGTGCTAGGCTTTTGTTAGCAAACGGCGCGCGAACCGATTTTCGGAACACAAGAGAAGGTGATACACCTTTGCACATAGCAGCAGCCAATGGAGATGAGAACATGGTGAAGCTTTTATTGCATAAAGGAGCTACAAAATATGTGAGAAACAAACTAGGGAAAACTGCGTTCGATGTTGCGGCCGAAAACGGTCACTCGCGCCTCTTCGACGCGCTTCGTTTAGGGGACAGTTTATGCGTGGCAGCGCGGAAAGGCGAGGTGAGGACAATCCAAAAGGTTTTGGAAAGTGGTGGAGTGATCAATGGAAGAGATCAAAATGGATGGACATCACTTCATAGGGCTTCATTCAAGGGAAGAATAGATGCTGTTAGGTTTCTTGTGGAGAAAGGTATTGATTTGGATGCAAAAGATGAAGATGGTTATACAGCTTTGCATTGTGCTGCTGAATCAGGACATGCTGATGTGACTGAGTTTTTGGTTAAGAAAGGTGCTGATGTTGAAGCAAGGACTAATAAAGGTGTTAGTGCTTTGCAAATTGTGGAGTCATTGAACTATGTAGGGATTACAAGGATACTTGTTAATGGAGGTGCTAGTAGAGAAGGTTTAGGTGAAAAATTTCCATCTGCACCTTCTAAGATTCCTTTTGGGAGTAAAGTTGAAGGTGGAAGTGTGATGACGACGAAGAAGAAAATGAGTAGTCGAACTCGAGCGCTACGAGGTAGCTTTGATCGTTCAATGCCTTTGGCTGTTCTCTAG 1626 0.4108 MDRLIRLDPSNIVLIRVEQGQKCQGKITLNNVMYTMPVAFRIQPLIKTRYTIKPQSGIISPLASLVIEITYHPPQQQGSSNLPHSFPFSDDSFLLHSVLAPGAAIKEPSSMFDSVPSDWFTTKKKQVFIDSAIKVMFVGSQILTQLVEDGNSMDDIREVLEKSDPLWESVNSKDSKGQTLLHLAISKTRPDLVQLILEFKPDIEATNSVGSTPLEAASSSGESLIVELLLAHKANTEGSESSIFRPIHHASREGHMEILRLLLLKGAKVDSLTKDGNTSLHLAVEEKRRDCARLLLANGARTDFRNTREGDTPLHIAAANGDENMVKLLLHKGATKYVRNKLGKTAFDVAAENGHSRLFDALRLGDSLCVAARKGEVRTIQKVLESGGVINGRDQNGWTSLHRASFKGRIDAVRFLVEKGIDLDAKDEDGYTALHCAAESGHADVTEFLVKKGADVEARTNKGVSALQIVESLNYVGITRILVNGGASREGLGEKFPSAPSKIPFGSKVEGGSVMTTKKKMSSRTRALRGSFDRSMPLAVL 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00553 541 Gene3D - 314 363 IPR036770 -
Vivi4g00553 541 Gene3D - 434 484 IPR036770 -
Vivi4g00553 541 ProSiteProfiles Ankyrin repeat region circular profile. 309 334 - -
Vivi4g00553 541 PANTHER ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED 370 486 - -
Vivi4g00553 541 Pfam MSP (Major sperm protein) domain 5 111 IPR000535 -
Vivi4g00553 541 Pfam Ankyrin repeats (many copies) 398 450 IPR002110 GO:0005515
Vivi4g00553 541 ProSiteProfiles Ankyrin repeat profile. 176 208 IPR002110 GO:0005515
Vivi4g00553 541 SUPERFAMILY PapD-like 2 151 IPR008962 -
Vivi4g00553 541 Gene3D Immunoglobulins 1 129 IPR013783 -
Vivi4g00553 541 ProSiteProfiles Ankyrin repeat region circular profile. 275 306 - -
Vivi4g00553 541 ProSiteProfiles Ankyrin repeat region circular profile. 176 207 - -
Vivi4g00553 541 Pfam Ankyrin repeats (3 copies) 246 302 IPR002110 GO:0005515
Vivi4g00553 541 Pfam Ankyrin repeats (3 copies) 305 362 IPR002110 GO:0005515
Vivi4g00553 541 Pfam Ankyrin repeats (3 copies) 159 235 IPR002110 GO:0005515
Vivi4g00553 541 PRINTS Ankyrin repeat signature 310 325 IPR002110 GO:0005515
Vivi4g00553 541 PRINTS Ankyrin repeat signature 445 459 IPR002110 GO:0005515
Vivi4g00553 541 ProSiteProfiles Ankyrin repeat profile. 429 461 IPR002110 GO:0005515
Vivi4g00553 541 ProSiteProfiles Ankyrin repeat region circular profile. 246 270 - -
Vivi4g00553 541 Gene3D - 131 239 IPR036770 -
Vivi4g00553 541 SUPERFAMILY Ankyrin repeat 169 490 IPR036770 -
Vivi4g00553 541 ProSiteProfiles Ankyrin repeat profile. 246 274 IPR002110 GO:0005515
Vivi4g00553 541 ProSiteProfiles Ankyrin repeat profile. 309 341 IPR002110 GO:0005515
Vivi4g00553 541 ProSiteProfiles Ankyrin repeat profile. 209 241 IPR002110 GO:0005515
Vivi4g00553 541 Gene3D - 240 313 IPR036770 -
Vivi4g00553 541 Gene3D - 364 433 IPR036770 -
Vivi4g00553 541 SMART ANK_2a 396 425 IPR002110 GO:0005515
Vivi4g00553 541 SMART ANK_2a 275 304 IPR002110 GO:0005515
Vivi4g00553 541 SMART ANK_2a 429 458 IPR002110 GO:0005515
Vivi4g00553 541 SMART ANK_2a 309 338 IPR002110 GO:0005515
Vivi4g00553 541 SMART ANK_2a 176 205 IPR002110 GO:0005515
Vivi4g00553 541 SMART ANK_2a 342 371 IPR002110 GO:0005515
Vivi4g00553 541 SMART ANK_2a 209 238 IPR002110 GO:0005515
Vivi4g00553 541 SMART ANK_2a 242 271 IPR002110 GO:0005515
Vivi4g00553 541 ProSiteProfiles Major sperm protein (MSP) domain profile. 4 138 IPR000535 -
Vivi4g00553 541 ProSiteProfiles Ankyrin repeat region circular profile. 396 428 - -
Vivi4g00553 541 ProSiteProfiles Ankyrin repeat profile. 396 428 IPR002110 GO:0005515
Vivi4g00553 541 ProSiteProfiles Ankyrin repeat region circular profile. 429 461 - -
Vivi4g00553 541 ProSiteProfiles Ankyrin repeat profile. 275 307 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00553 Vivi-Chr4 12349081 12351275 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00553 367 486 Ion Channels AT4G32500 31.667 1.76e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00553 - - qsa:O6P43_006204 786.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g00553 4 12349081 12351275 Vivi4g00577 4 12708618 12710867 PCT