Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00543 ATGGAAAATAAGCTCTACTCAAAAGTGCTTCTAGTTTTAGTTACAATTTTTCTTTCAACTTCTTACACAAACCAGCTTCATCTTCAATCCTCACATACTCACACTCTTCTAAGACTCAAACGCCTCTTAAACTTCCCTTCGATTTTAAGCTCATGGAATTCAAACACAGATTTTTGCAACACAGATTCAAAAGCTTCTCTAACTGTTGTATGCTATGAAGAAACCATAACTCAGCTTCACATAGTTGGTGAAACATCAACAAAACTTCCAAAAAACTTCTCAATAGATTCATTTTTCGCGACACTTTCGCGAATCCCGTCTCTAAAAGTCCTCACACTAGTTTCCTTAGGGTTACGGGGTCCGCTTCCCGGAAAAATCGCGAGTTTATCATCGTTGGAGATTGTTAACATGAGTTCAAATTTTCTACATGGAACTATCCCTCAAGAGCTTCCATTGCTTTCGAGTCTTCAAGCGCTCGTTCTCGATAACAACATGTTCGATGGACATTTACCCGATTGGTTGGACTCGTTTCCGTTGTTAACTGTTTTGAATTTGAAACGAAACTTATTCAACGGTTCGCTTCCTGATTCGTTGAGTAGCTTGACGAATATGCGAGTTCTTTCGCTTTCTGGTAACCGTTTCAACGGATCCGTACCGGATTTGAGCCGGTTGGTTAATCTTCAAGTGTTGGAATTGGATGATAATGGATTTGGACCTAACTTTCCAAGAATCTGTAACAAATTGGTTACTTGCGTTCTAAGAAACAACAAGTTTAGGTCTAGTTTACCTGATAACATGAGTTCGTATTATCAACTCGAGAGATTCGACATCTCGGATAACGCGTTCGTTGGACCGATGCAATTGGAATTGTTTTCGCTTCCTTCGATTACTTATCTCAACATTTCGAGAAACAAATTATCAGGAATGCTTTTTGAGAATCTGTCATGTAATTCGGTTCTAGAAGAAGTTGATCTGTCTTCGAATCTTTTGAGTGGAAAATTACCGAAATGTTTAGTATCGAATTCCGATAATAGGAGTTTCTTGTATGGTGGAAATTGTTTGGAGGAAACAAACCGAAATCAAAATCAACATGAACAATCTTTCTGTCACACTGAAGCTATAGCTGTTGGAATAGTTCCTAATGAGAGAAAGAAGCATAAAGGAGTTTCTAAAAAAGTTCTTTCTTTTGCGATTGTTGGTGGAATTTTCGGAGGATTCGCACTTGTTGCATTGATTTTTAGTATTATAAGACGGAAAAAAGGTAAAAGCATGATGATGATGAAGAATTCTCAAACAAAATTGATATCAGAAAATGCAGCTTCTGGATACACTTCTAAGTTAATCACTGATGCAGGGTATGTATCCAAAACAATGAACTTTGGAAGTGTTGGCCTACCACCTTATAGAGCTTTTTCCCTAGAAGAGATTATGGCAGCTACTAACAACTTTGACACCACTTCTTTCATGGGAGGTGAAGGCTCTCAAGGACAGATGAATAGAGGCCAACTGAAAGAAGGTTCACTAGTTGCTATTAGAAGTGTGAGATTGACCAAAAGCTACAAGACTAAAGATTTCATGCAGCACATAGAAATGATATCGAAATTCCGGCATCATCATTTAGTTAGTGTTCTCGGACATTGCTTCGAATATTACCTAGATGATGCAAATGTCAGACGGATATTTATCGTCTTTGAGTATGTACCAAATGGATCACTCAAGAGCTGGATCTCAGATAGGCATTATAGAAAGTCGCTTACATGGACTCAACGCATCGCGGCTGCAACTGGAGTAGCGAAAGGGATTCAGTTTTTGCATACAGAGATTGTTCCTGGCGTATACTCGAACAATCTCAAAATCGCAGATGTTTTATTGGATCAGAACTTTGTTGCGAAAATCAGTAGTTATAATATGCCTTTGTTATCGAAAAGTCCTAGCTTTAACAAAAGTGTGAAAAGTGAAGACAAGTCTGATATATATGACTTTGGTGTGATACTAATGGAACTCATTCTAGGAAGGACTATAAAGTCTAGGAATGTCGAAACTTTGAAGGATTTGTTGCAAGCAAGTATAATATCAGATGATGAAGCTAGAAGAAGCATTATAGATTCGTCGATTCGTGACGCGTGTTTGGATCAATCGTTGAAGACAATGATGGAGATTTGTGTGAGGTGTTTGGTTAAAGAGATGGAAGATAGGCCTTCTATAGAAGATGTTTTGTGGAATTTGCAATTTGCTTCTCAAGTTCAAGATGCATGGAGAGGTGACTCTCTTAGTAGTGATAGCTCTCCGCTTTCGCCTTTACCGGCTCGACGAATGAACTTCCATTAG 2328 0.384 MENKLYSKVLLVLVTIFLSTSYTNQLHLQSSHTHTLLRLKRLLNFPSILSSWNSNTDFCNTDSKASLTVVCYEETITQLHIVGETSTKLPKNFSIDSFFATLSRIPSLKVLTLVSLGLRGPLPGKIASLSSLEIVNMSSNFLHGTIPQELPLLSSLQALVLDNNMFDGHLPDWLDSFPLLTVLNLKRNLFNGSLPDSLSSLTNMRVLSLSGNRFNGSVPDLSRLVNLQVLELDDNGFGPNFPRICNKLVTCVLRNNKFRSSLPDNMSSYYQLERFDISDNAFVGPMQLELFSLPSITYLNISRNKLSGMLFENLSCNSVLEEVDLSSNLLSGKLPKCLVSNSDNRSFLYGGNCLEETNRNQNQHEQSFCHTEAIAVGIVPNERKKHKGVSKKVLSFAIVGGIFGGFALVALIFSIIRRKKGKSMMMMKNSQTKLISENAASGYTSKLITDAGYVSKTMNFGSVGLPPYRAFSLEEIMAATNNFDTTSFMGGEGSQGQMNRGQLKEGSLVAIRSVRLTKSYKTKDFMQHIEMISKFRHHHLVSVLGHCFEYYLDDANVRRIFIVFEYVPNGSLKSWISDRHYRKSLTWTQRIAAATGVAKGIQFLHTEIVPGVYSNNLKIADVLLDQNFVAKISSYNMPLLSKSPSFNKSVKSEDKSDIYDFGVILMELILGRTIKSRNVETLKDLLQASIISDDEARRSIIDSSIRDACLDQSLKTMMEICVRCLVKEMEDRPSIEDVLWNLQFASQVQDAWRGDSLSSDSSPLSPLPARRMNFH 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00543 775 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 567 758 - -
Vivi4g00543 775 Gene3D Ribonuclease Inhibitor 29 246 IPR032675 -
Vivi4g00543 775 Pfam Leucine rich repeat 155 214 IPR001611 GO:0005515
Vivi4g00543 775 Gene3D Transferase(Phosphotransferase) domain 1 567 756 - -
Vivi4g00543 775 SUPERFAMILY L domain-like 32 354 - -
Vivi4g00543 775 Gene3D Phosphorylase Kinase; domain 1 463 565 - -
Vivi4g00543 775 Pfam Protein tyrosine and serine/threonine kinase 491 637 IPR001245 GO:0004672|GO:0006468
Vivi4g00543 775 SUPERFAMILY Protein kinase-like (PK-like) 462 746 IPR011009 -
Vivi4g00543 775 Gene3D Ribonuclease Inhibitor 247 372 IPR032675 -
Vivi4g00543 775 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 456 566 - -
Vivi4g00543 775 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 93 742 - -
Vivi4g00543 775 MobiDBLite consensus disorder prediction 753 775 - -
Vivi4g00543 775 ProSiteProfiles Protein kinase domain profile. 484 744 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00543 775 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 29 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00543 Vivi-Chr4 12051390 12055548 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00543 45 768 Miscellaneous Gene Families AT3G03770 57.987 0.0 813
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Vivi4g00543 PK_Tyr_Ser-Thr 6.3e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00543 - - gmx:100813207 1075.46