Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00542 ATGGCGGAATCACATAGTGGTGATGGTGGTTCGGGAACTAGGCGTAGTAAAGGCGTCAATGCTGCAAAGCGAGCCATTGCAGGAGCGACGACGCATGATGTATCGGTTGTGGCGCCTTGTGGGGCGTGTAAGTTCTTGAGGAGGAAGTGTAGTGGTGGATGCATTTTCGCACCTTACTTTGGTACAGATCAAGGTGCAGCTAGGTTTGCGGCTGTGCACAAGGTTTTTGGTGCTAGCAATGTGTCGAAGCTTTTGGCCAATATTCCGACCGACCACCGCCAAGAAGCAGCCGCAACTATATCCTATGAGGCTCAGGCTAGGCTATCGGATCCGGTTTATGGTTGTGTGTCCACTATTCTTGCTTTGCAGCAACAGGTGGCAGCAATGCAAGCAGAGGTTTCTATGATGCAATCTCAACTGATGAATAGCAGATATGCATATGCAAGTACTCTTCAAACCACACACCAGCAGCAGCATCAAATACTACAGCAACCAAACTTCAATGTGTCCGTGCAACCGGCATACTCCAACAACTCATCTGCTTCAACCAACAACCTCGTGAACATGAACAACTTCAACCATGGTTTTGATCTCACAATGGAGACAGCACCTTCATCTCACAGCTTAGAGCCTTTTCAAAACTCAAGATTGTCACAGTATGAGGATGATGATTAA 675 0.4756 MAESHSGDGGSGTRRSKGVNAAKRAIAGATTHDVSVVAPCGACKFLRRKCSGGCIFAPYFGTDQGAARFAAVHKVFGASNVSKLLANIPTDHRQEAAATISYEAQARLSDPVYGCVSTILALQQQVAAMQAEVSMMQSQLMNSRYAYASTLQTTHQQQHQILQQPNFNVSVQPAYSNNSSASTNNLVNMNNFNHGFDLTMETAPSSHSLEPFQNSRLSQYEDDD 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00542 224 Coils Coil 119 139 - -
Vivi4g00542 224 ProSiteProfiles LOB domain profile. 38 140 IPR004883 -
Vivi4g00542 224 PANTHER LOB DOMAIN CONTAINING PROTEIN 37 197 - -
Vivi4g00542 224 Pfam Lateral organ boundaries (LOB) domain 39 137 IPR004883 -
Vivi4g00542 224 MobiDBLite consensus disorder prediction 203 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00542 Vivi-Chr4 12048962 12050774 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00542 38 224 AS2 family AT3G03760 60.204 7.40e-66 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vivi4g00542 LOB 1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00542 - - aprc:113866578 268.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g00542 4 12048962 12050774 Vivi4g00542 4 12048962 12050774 ECH