Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00541 ATGAATGTAAAACAAACAGAAATGAAGCTTCCAAAGAAGGCGAATAATCAAAACTCAGAATCACTTCTAGTTCAAAACGCAGACCTAATCCTCCCATGGCTAACCCATCAACAGCTCGCCACTCTATCCCTAACCTCCAAATCACTCCACAATCTCTCTCAATCCATAACCCTAAATCGCATCTCCGACGCTTCCAGAAACTTCGAGAATTTCCCAATCCCATTCCTCAACAACAACAACAATCAAAACCACCCTTACTCATACTTTCTCTACACACCTTCACTTCTTCTCTCCAGCACCAACAACATCCCTCGTTACCAACCATGGGGTGGCAATTCTGCAACTTCAACAAACCCTAAAACGATTGGTGATAATGATAACGATGATGATGGATTGGTGAGTTTTGTTGATGTGGTGGGTTGTGACTGCGGAGAGATTTGTGGGGAAGAATGTGGGTGTTTAGGGTTTTGTGATGATGTTGGACGGGAGTGTGGACCGGGTTGTTTTTGTGAGGTGGGGTGTGGGAATAGGGTGAGTCGGAATGGGGTTGCGGTTAGGGTTAAGATTGTGAGGTGTGGTGGAGAGAAAGGGTGGGGTTTGTTTGCTGATCAGGTTATTCGTAAAGGAGAGTTCTTGTTTCATTATGCAGGTGAACTATTGACAACCAAAGAAGCACAAAGGAGACAACAATTCTACGATGAATTGTCATCGCGTGGTCGTTTCTCATCTGCACTTTTAGTTGTAAGGGAACATCTTCCATCTGGAAATGCATGTTTGAGATTGAACATAGACGCTACAAGAATAGGAAACGTTGCACGGTTTGTAAATCATTCATGCGATGGCGGTAATTTAAGCACAAAGCTTATTAGAAGTTCAGGAGCTTTGTTCCCCCGCCTTTGCTTCTTTGCTCTGAAAGATATTCAAAAAGACGAAGAGCTTACTTTTAGCTATGGAGAAATCAGGAAAAGGTCCAACGGGTTGCCGTGTTACTGCAACAGCCCTTCTTGCCTTGGAACACTGCCTTCAGAAGACACTTGA 1038 0.4383 MNVKQTEMKLPKKANNQNSESLLVQNADLILPWLTHQQLATLSLTSKSLHNLSQSITLNRISDASRNFENFPIPFLNNNNNQNHPYSYFLYTPSLLLSSTNNIPRYQPWGGNSATSTNPKTIGDNDNDDDGLVSFVDVVGCDCGEICGEECGCLGFCDDVGRECGPGCFCEVGCGNRVSRNGVAVRVKIVRCGGEKGWGLFADQVIRKGEFLFHYAGELLTTKEAQRRQQFYDELSSRGRFSSALLVVREHLPSGNACLRLNIDATRIGNVARFVNHSCDGGNLSTKLIRSSGALFPRLCFFALKDIQKDEELTFSYGEIRKRSNGLPCYCNSPSCLGTLPSEDT 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00541 345 Pfam SET domain 197 318 IPR001214 GO:0005515
Vivi4g00541 345 Gene3D SET domain 42 326 IPR046341 -
Vivi4g00541 345 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUV39H 163 340 - -
Vivi4g00541 345 SMART set_7 185 324 IPR001214 GO:0005515
Vivi4g00541 345 ProSiteProfiles SET domain profile. 185 318 IPR001214 GO:0005515
Vivi4g00541 345 ProSiteProfiles Post-SET domain profile. 325 341 IPR003616 -
Vivi4g00541 345 SUPERFAMILY SET domain 70 338 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00541 Vivi-Chr4 12046426 12048793 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00541 163 340 C2H2 Transcription Factor Family AT2G23740 31.915 8.21e-20 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vivi4g00541 SET 2.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00541 K11433 - gmx:100786871 395.586