Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00535 ATGTTGTGGGTAGACAAGTATCGTCCCAAAACCCTAGACCATGTTATGGTTCACAGCGATACCGCTCAAAATCTCAAGAAATTGGTTTCAGAACATGATTGTCCTCATTTGCTGTTCTATGGTCCATCAGGTTCTGGCAAGAAAACCCTAATCATGGCTCTTCTCCGCCAAATGTTTGGACCCGGTGCTGAAAAGGTGAAGGTGGAAAATAGAGCATGGAAAGTGGATGCTGGGAGTAGATCTATTGATTTAGAGCTGACAACATTATCAAGTGCCAATCATATTGAAATGACTCCAAGCGACGCAGGCTTTCAGGACAGATACATTGTTCAAGAAATAATCAAAGAAATGGCTAAAAATAGACCCATTGATACGAAAGGGAAGAAAGGATTTAAAGTGCTTGTCCTAAATGACGTGGACAAACTCTCCAGAGAAGCCCAACATTCTCTCCGCAGAACGATGGAGAAATATAGCGCTTATTGCAGATTGATTTTGTGTTGCAATAGTTCTTCTAGAGTCACAGAAGCCATCCGCTCCCGTTGTCTTAATGTGCGAGTAAATGCACCAAGTGAAGAACAGATTGTTGAAGTTTTACAATTCATTGGGAAGAAAGAAGGGCTGCAACTTCCTTCTAGTTTTGCTGCTCGCATAGCAGAGAAATCAAATCGAAATTTAAGGAGGGCCATACTATCATTTGAGACTTGCCGCGTCCAACAGTATCCTTTCACCGATAAACAAACAATTTCCCCAATGGACTGGGAGGAATACATTTCAGAAATCGCATCCGACATAATGAAGGAACAGAGCCCAAAAAGGTTGTTTCAAGTTCGAGGGAAACTGTATGAGCTTCTAATCAATTGTATCCCTCCCGAAATCATTTTGAAGAGGCTACTTTATGAGCTATTGAGAAAACTGGATGCGGAACTTAAGCATGAAGTCTGCCATTGGGCAGCATATTACGAACATAGGATGCGCCTTGGACAGAAGGCCATTTTTCACATCGAAGCTTTTGTGGCGAAGTTCATGAGCGTCTATAAGTCCTTCCTGATCGCAACATTTGGCTGA 1065 0.4225 MLWVDKYRPKTLDHVMVHSDTAQNLKKLVSEHDCPHLLFYGPSGSGKKTLIMALLRQMFGPGAEKVKVENRAWKVDAGSRSIDLELTTLSSANHIEMTPSDAGFQDRYIVQEIIKEMAKNRPIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSRCLNVRVNAPSEEQIVEVLQFIGKKEGLQLPSSFAARIAEKSNRNLRRAILSFETCRVQQYPFTDKQTISPMDWEEYISEIASDIMKEQSPKRLFQVRGKLYELLINCIPPEIILKRLLYELLRKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSVYKSFLIATFG 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00535 354 CDD AAA 25 190 - -
Vivi4g00535 354 Gene3D - 1 189 IPR027417 -
Vivi4g00535 354 Gene3D - 190 250 - -
Vivi4g00535 354 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 240 IPR027417 -
Vivi4g00535 354 SMART AAA_5 33 189 IPR003593 GO:0016887
Vivi4g00535 354 FunFam Replication factor C subunit 5 1 189 - -
Vivi4g00535 354 FunFam replication factor C subunit 3 190 248 - -
Vivi4g00535 354 CDD HLD_clamp_RFC 189 257 - -
Vivi4g00535 354 FunFam Replication factor C subunit 3 252 345 - -
Vivi4g00535 354 Pfam DNA polymerase III, delta subunit 19 187 - -
Vivi4g00535 354 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 3 338 - -
Vivi4g00535 354 SUPERFAMILY post-AAA+ oligomerization domain-like 251 346 IPR008921 GO:0003677|GO:0006260
Vivi4g00535 354 Gene3D - 252 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00535 Vivi-Chr4 11983197 11986709 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00535 1 354 Core DNA Replication Machinery Family AT5G27740 85.028 0.0 652
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00535 K10756 - gmx:100818329 662.144