Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00525 ATGGAAGATCAACAACAAAAACAACATGTTCAGACTCAAAGTTCCAACACCAATAATCCAAACAACACTGAAAAGAGTGAAACTGTGAGATCAAGATGGACACCAAAGCCTGAGCAAATCCTCATACTTGAATCCATTTTCAATAGTGGAATGGTGAATCCACCAAAAGATGAAACTGTTAGAATAAGAAAACTTCTTGAGAAATTTGGACCTGTTGGTGATGCTAATGTTTTCTATTGGTTTCAAAATCGTCGCTCCCGCTCTCGTCGTCGTCAGAGACAGATGCAAGCCGCAGCCGAGCTAGCCGGAGGAGGCGGTGCAAATCTTTACCACCAATACCAGTGCAATACCAACAGTAACTCTATGTCTGTTGGTACTGCTATTGGTTTTGGTGGTTCATCTGGTCTCACTATGATGAACCCTCCTTCTGGTTCTTCTTATAATAATAATTTTTCGAGTTCATCTTCGGTGTCTGGTGTTGGTGTCGGTGTCGGTGGTGCAGAAGAAGGGTTTCCTGGTTTATTTTTAGGTTCTTCTCAAATTAATTTTCCTGAGATTGATCATACTTCTGCTGCTTCTTCAGTTTTGAACCCTTCTCATGATCATGCTTTAAATTTGAACTATCATCATTCAGGATTTGGGGGGAGTGATGTTTCAGGTTTGATCACAGTGTATATCAATGGAGTTGCAACAGAAGTAGCAAGAGGTGCAATTGACATGAAAACAGTGTTTGGTGAAGATGTTATGTTAATTCATTCCTCTGGAGTTTCAGTTCCAACCAATGAATTTGGCATCTTGATGCAGAGCTTGCAGCATGGTGAAAGCTATTTTCTGGTTTCAAAGCAAACACAAGCATGA 858 0.4056 MEDQQQKQHVQTQSSNTNNPNNTEKSETVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGPVGDANVFYWFQNRRSRSRRRQRQMQAAAELAGGGGANLYHQYQCNTNSNSMSVGTAIGFGGSSGLTMMNPPSGSSYNNNFSSSSSVSGVGVGVGGAEEGFPGLFLGSSQINFPEIDHTSAASSVLNPSHDHALNLNYHHSGFGGSDVSGLITVYINGVATEVARGAIDMKTVFGEDVMLIHSSGVSVPTNEFGILMQSLQHGESYFLVSKQTQA 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00525 285 ProSiteProfiles 'Homeobox' domain profile. 26 91 IPR001356 GO:0003677
Vivi4g00525 285 MobiDBLite consensus disorder prediction 1 33 - -
Vivi4g00525 285 MobiDBLite consensus disorder prediction 7 28 - -
Vivi4g00525 285 PANTHER WUSCHEL-RELATED HOMEOBOX 11 2 282 IPR044558 GO:0003700|GO:0048830
Vivi4g00525 285 SUPERFAMILY Homeodomain-like 24 98 IPR009057 -
Vivi4g00525 285 Gene3D - 30 97 - -
Vivi4g00525 285 SMART HOX_1 28 95 IPR001356 GO:0003677
Vivi4g00525 285 Pfam Homeodomain 30 90 IPR001356 GO:0003677
Vivi4g00525 285 FunFam WUSCHEL-related homeobox 11 30 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00525 Vivi-Chr4 11617015 11620135 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00525 13 283 Wox Gene Family AT5G17810 50.883 7.61e-70 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vivi4g00525 Homeodomain 2.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00525 - - lang:109335690 295.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g00525 4 11617015 11620135 Vivi4g00525 4 11617015 11620135 ECH