Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00524 ATGGAAGATCAACAACAAAAACAACATGTTCAGACTCAAAGTTCCAACACCAATAATCCAAACAACACTGAAAAGAGTGAAACTGTGAGATCAAGATGGACACCAAAGCCTGAGCAAATCCTCATACTTGAATCCATTTTCAATAGTGGAATGGTGAATCCACCAAAAGATGAAACTGTTAGAATAAGAAAACTTCTTGAGAAATTTGGACCTGTTGGTGATGCTAATGTTTTCTATTGGTTTCAAAATCGTCGCTCCCGCTCTCGTCGTCGTCAGAGACAGATGCAAGCCGCAGCCGAGCTAGCCGGAGGAGGCGGTGCAAATCTTTACCACCAATACCAGTGCAATACCAACAGTAACTCTATGTCTGTTGGTACTGCTATTGGTTTTGGTGGTTCATCTGGTCTCACTATGATGAACCCTCCTTCTGGTTCTTCTTATAATAATAATTTTTCGAGTTCATCTTCGGTGTCTGGTGTTGGTGTCGGTGTCGGTGGTGCAGAAGAAGGGTTTCCTGGTTTATTTTTAGGTTCTTCTCAAATTAATTTTCCTGAGATTGATCATACTTCTGCTGCTTCTTCAGTTTTGAACCCTTCTCATGATCATGCTTTAAATTTGAACTATCATCATTCAGGTTTGATCACAGTGTATATCAATGGAGTTGCAACAGAAGTAGCAAGAGGTGCAATTGACATGAAAACAGTGTTTGGTGAAGATGTTATGTTAATTCATTCCTCTGGAGTTTCAGTTCCAACCAATGAATTTGGCATCTTGATGCAGAGCTTGCAGCATGGTGAAAGCTATTTTCTGGTTTCAAAGCAAACACAAGCATGA 834 0.4029 MEDQQQKQHVQTQSSNTNNPNNTEKSETVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGPVGDANVFYWFQNRRSRSRRRQRQMQAAAELAGGGGANLYHQYQCNTNSNSMSVGTAIGFGGSSGLTMMNPPSGSSYNNNFSSSSSVSGVGVGVGGAEEGFPGLFLGSSQINFPEIDHTSAASSVLNPSHDHALNLNYHHSGLITVYINGVATEVARGAIDMKTVFGEDVMLIHSSGVSVPTNEFGILMQSLQHGESYFLVSKQTQA 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00524 277 ProSiteProfiles 'Homeobox' domain profile. 26 91 IPR001356 GO:0003677
Vivi4g00524 277 MobiDBLite consensus disorder prediction 1 33 - -
Vivi4g00524 277 Gene3D - 30 97 - -
Vivi4g00524 277 MobiDBLite consensus disorder prediction 7 28 - -
Vivi4g00524 277 FunFam WUSCHEL-related homeobox 11 30 97 - -
Vivi4g00524 277 PANTHER WUSCHEL-RELATED HOMEOBOX 11 2 274 IPR044558 GO:0003700|GO:0048830
Vivi4g00524 277 SUPERFAMILY Homeodomain-like 24 98 IPR009057 -
Vivi4g00524 277 SMART HOX_1 28 95 IPR001356 GO:0003677
Vivi4g00524 277 Pfam Homeodomain 30 90 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00524 Vivi-Chr4 11617009 11620143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00524 13 275 Wox Gene Family AT5G17810 52.364 3.20e-71 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vivi4g00524 Homeodomain 2.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00524 - - lang:109335690 280.411