Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00523 ATGAGTTCACTAAACTTGAACAATGATGGTTATGGTTTATCTTTTGACTTGAATGCTCCTTTTTTATCTCAAGTTCCTTCTTCATCTTCTGCTCCCTATTTGGGTCATCATGTTGTGTCTGAAAAGTCTGAAATACCCTTTGAGATTTTGAACCCTTTAGTGATCCATCCTAATGGGAATGAGAACATGGTTCCAAACAATGAAGGGTATTTTGGGAATGGTCAAAAAAACATGTCTTTGGAAAATGATGAGGCTGAAAATGAAGCTAAAAACATGTTTTTTGAAACACAGAAATTTATGAACTCTAATCTTTTTATTAGAGGCCATTGGAGACCAAATGAAGATGCTAAGCTTAAAGCACTAGTAGCTGAACATGGTCCTCAAAATTGGAACATAATTGCTGAAAATCTACCTGGTAGATCAGGAAAAAGCTGCAGATTGAGGTGGTTTAATCAGCTAGATCCTAAAATCAATAGGACAGCTTTTAGCAAGGAAGAGGAGTATAAGCTTTTGGAAGCTCATAATTTTTATGGTAACAAATGGGCAGCCATTTGCAAACTGTTTCCTGGGAGGACAGACAATGCTGTCAAGAATCATTGGCATGTGATCATGGCTAGGAGGCAAAGGGGGCAATCATCTAGAAAGAAAAGGCCAGCATTTCAAACTCCTTCAAATGAATCACTCACAAGTGCCATTGATGAGTCTAATTCTAATTTCCTCAAATTCAATCTTGCTACTAGGCCTCTTATCAATTACCAAGCCTATGGATTACAAATGGGTTTATTTGGAGCAAGAAACCAAGAAGCAAGGGATTTTGGTTTTGACAAGATTTTCAGTGCTATGAAAGGTTCATCTATAGGTCACATGGAAAAGCTAAAGAGTGTGGACCAATCCAATTATTCAGATTCAAAGTCAGAAGTTTCAGTATCTGAGTCAGTTGCAACAAACAGGAAAAATGAAGCATTTTTGGGAGACAAGATTAAGAAGCCATTTATTGACTTTCTTGGAGTAGGATATACTTAG 1023 0.3705 MSSLNLNNDGYGLSFDLNAPFLSQVPSSSSAPYLGHHVVSEKSEIPFEILNPLVIHPNGNENMVPNNEGYFGNGQKNMSLENDEAENEAKNMFFETQKFMNSNLFIRGHWRPNEDAKLKALVAEHGPQNWNIIAENLPGRSGKSCRLRWFNQLDPKINRTAFSKEEEYKLLEAHNFYGNKWAAICKLFPGRTDNAVKNHWHVIMARRQRGQSSRKKRPAFQTPSNESLTSAIDESNSNFLKFNLATRPLINYQAYGLQMGLFGARNQEARDFGFDKIFSAMKGSSIGHMEKLKSVDQSNYSDSKSEVSVSESVATNRKNEAFLGDKIKKPFIDFLGVGYT 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00523 340 Gene3D - 106 158 - -
Vivi4g00523 340 PANTHER MYB PROTEIN-RELATED 107 230 - -
Vivi4g00523 340 CDD SANT 161 201 IPR001005 -
Vivi4g00523 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 158 208 IPR017930 -
Vivi4g00523 340 SMART sant 106 155 IPR001005 -
Vivi4g00523 340 SMART sant 158 206 IPR001005 -
Vivi4g00523 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 107 157 IPR017930 -
Vivi4g00523 340 ProSiteProfiles Myb-like domain profile. 107 153 IPR001005 -
Vivi4g00523 340 SUPERFAMILY Homeodomain-like 106 200 IPR009057 -
Vivi4g00523 340 ProSiteProfiles Myb-like domain profile. 154 204 IPR001005 -
Vivi4g00523 340 Gene3D - 160 231 - -
Vivi4g00523 340 FunFam MYB transcription factor 107 158 - -
Vivi4g00523 340 MobiDBLite consensus disorder prediction 206 229 - -
Vivi4g00523 340 Pfam Myb-like DNA-binding domain 159 202 IPR001005 -
Vivi4g00523 340 Pfam Myb-like DNA-binding domain 107 153 IPR001005 -
Vivi4g00523 340 MobiDBLite consensus disorder prediction 215 229 - -
Vivi4g00523 340 CDD SANT 110 151 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00523 Vivi-Chr4 11583261 11585778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00523 82 338 MYB Transcription Factor Family AT5G17800 40.977 1.62e-61 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi4g00523 Myb_DNA-binding 1.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00523 K09422 - qsu:111993092 251.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g00523 4 11583261 11585778 Vivi4g00523 4 11583261 11585778 ECH