Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00519 ATGGGAAGCAGAAAGCAAGAAGAGAAGATTGAGAAGATTATTAGGGGGCTTATGAAGCTTCCGCCGAATCGAAGATGTATCAACTGTAACAGTTTGGGACCTCAGTATGCATGTACAACTTTTTGGACCTTCGTTTGCATAACTTGCAGTGGAATACATCGTGAGTTTACTCATCGTGTGAAGTCTGTGTCAATGTCAAAGTTCACTTTGCAAGAAGTTGATGCTCTTCAAAATGGCGGTAACCAGCGTGCAAGGGAAATATATTTGAAAAATTGGGACTTCCAAAAACAACGGTTTCCAGATAGCAGCAACGTTGATAAAGTAAGAGAGTTCATAAGGAATGTATATGTGGATAAACGATATGCTGGAACAAAGTCATCTGAAAGGCCTCCAAGAGATGCACAGAGCCCCACAATTCATGATGACGAGATTAGACGTGCCAGTTCTTATCATTCATATTCACAAAGTCCTCCATATGATAATCAATATGAGGATAGGCGCTATGGAAAGCTAGCAGGGGCTCTGACGAGAAAGCCTGGTTCAGATAAAGTCCGTTATGAAGGGAAGATGTCTAGTATTATCTATAGTCCAGGTCGTTTCAGTGATCACTCATATGATGAAAGATTTGCAAATGAGGGATCCGGTCCAAGAAATTCCGACTTTTCTGTGTCTAGTGGTCATGAGCAATTCAAATCCGATGTTCAGTCTCCTCAGTTTCATAAGGACATTGAGTTTAACAGCCCATCTCATAAGCATCCTGGTTCTAGTTCAAGCGAAGATGTGTGGTTTCAAGCAAAAAATGCAGCTCTCGAATCTAATGCCGCTGCCAAGAGAGATGCAGATGGAGTTCGTCATCCGCAGAGAACTACATCATTGCAACCAACAGACAACAACTTTTCAACCTTAAGATCTTACAATTCTGGCAGTTCAATTGATTTTTTCTCGGAAGCTGTCCAATCTTCAGGGTCCCTTCAAGATAAAGCATCAGGAATTTCACTGCCATCTGGTCATGCAAGATCTGTTAGCTTGGATCTTTCCAAGGCACCAGTGGCATCAGCTTCAACTGTTGTTCTTTCTCAAACAGCTGCACCATCTCAAGCTCCATTGGGAGATCTGTTTCAGTTATCTGATATGGATGTAGCCACATCTTTCAAGGGAAATCAACCTACACAAACAGCACAATTCGCATCTAATGATTTCTTTTTGGAGGCTACTGCAACCTCTGATGCAAAATCAGCAGAGATATCCATCCCTAAAAATGAAGGGTGGGCAACATTTGATACACCTCAGTTCACATCATCTACTGCACAAGTGGAAACTCATGCGGCAGTACCTTTAAGTGCTGAATCTTTGCAGGATAGATTTGATCCATTTTCAACCTCGAATGGTAATATGCAATGGCCATCTTTTGAAATTTCTAGTGTTGGTGTACCTTCTGTTACATCTGATGTATGGCATGGCGGTGTATGGAATGAAGAAAAAGAAGTTCCTGTTGTGGCTACAGACACTCAATCATGGAATGCATTTGAAGATTCTGGTACACAATTTCCTGTGAATGGCAGTAGTCAAGGAATAAATTTGCACTATTTTCCATCAGAGATTTCGGGTTTAAGCGTTTCTGAGGGACCCAATAAAGATGCAATCCAAGGCGTTGCTCCTATTGGAAGTTTTGATAATCATGTCATCCCATCACACGGAGATACTCAACCTAACGGAATCAGTCATAAATCAACTAATCCATTTGATTTTCCCTTTGATTCTGATGTAGAGCAGAGCAATATGTTCCTTGATATGGGCTCTTTGCAAGCTGCTCTTCCAGATGCCCTCTTACCAGCCGCATTTGGTGGTATCCCTGAACCCTGGCTCCCTCAAAATACAGTAACACCATACATTTCCTCTGCAGGTGAAGGTGGTTTATCATTCATGGCTGTGCAAACGCCTAGTTCTCACTTACAGAACATCCAAGCACAAGAACCAGTTGCTTCGATTGGCGGAAATCCTTTTGCATAG 2010 0.4199 MGSRKQEEKIEKIIRGLMKLPPNRRCINCNSLGPQYACTTFWTFVCITCSGIHREFTHRVKSVSMSKFTLQEVDALQNGGNQRAREIYLKNWDFQKQRFPDSSNVDKVREFIRNVYVDKRYAGTKSSERPPRDAQSPTIHDDEIRRASSYHSYSQSPPYDNQYEDRRYGKLAGALTRKPGSDKVRYEGKMSSIIYSPGRFSDHSYDERFANEGSGPRNSDFSVSSGHEQFKSDVQSPQFHKDIEFNSPSHKHPGSSSSEDVWFQAKNAALESNAAAKRDADGVRHPQRTTSLQPTDNNFSTLRSYNSGSSIDFFSEAVQSSGSLQDKASGISLPSGHARSVSLDLSKAPVASASTVVLSQTAAPSQAPLGDLFQLSDMDVATSFKGNQPTQTAQFASNDFFLEATATSDAKSAEISIPKNEGWATFDTPQFTSSTAQVETHAAVPLSAESLQDRFDPFSTSNGNMQWPSFEISSVGVPSVTSDVWHGGVWNEEKEVPVVATDTQSWNAFEDSGTQFPVNGSSQGINLHYFPSEISGLSVSEGPNKDAIQGVAPIGSFDNHVIPSHGDTQPNGISHKSTNPFDFPFDSDVEQSNMFLDMGSLQAALPDALLPAAFGGIPEPWLPQNTVTPYISSAGEGGLSFMAVQTPSSHLQNIQAQEPVASIGGNPFA 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00519 669 MobiDBLite consensus disorder prediction 134 148 - -
Vivi4g00519 669 ProSiteProfiles ARF GTPase-activating proteins domain profile. 11 129 IPR001164 GO:0005096
Vivi4g00519 669 PANTHER ARFGAP/RECO-RELATED 1 669 IPR044820 GO:0005096
Vivi4g00519 669 MobiDBLite consensus disorder prediction 274 300 - -
Vivi4g00519 669 MobiDBLite consensus disorder prediction 286 300 - -
Vivi4g00519 669 MobiDBLite consensus disorder prediction 205 236 - -
Vivi4g00519 669 CDD ArfGap_AGFG 11 121 - -
Vivi4g00519 669 MobiDBLite consensus disorder prediction 215 233 - -
Vivi4g00519 669 MobiDBLite consensus disorder prediction 122 164 - -
Vivi4g00519 669 PRINTS HIV Rev interacting protein signature 42 59 IPR001164 GO:0005096
Vivi4g00519 669 PRINTS HIV Rev interacting protein signature 23 42 IPR001164 GO:0005096
Vivi4g00519 669 PRINTS HIV Rev interacting protein signature 60 81 IPR001164 GO:0005096
Vivi4g00519 669 SUPERFAMILY ArfGap/RecO-like zinc finger 10 122 IPR037278 -
Vivi4g00519 669 Pfam Putative GTPase activating protein for Arf 12 122 IPR001164 GO:0005096
Vivi4g00519 669 SMART arf_gap_3 11 129 IPR001164 GO:0005096
Vivi4g00519 669 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 134 - -
Vivi4g00519 669 Gene3D Arf GTPase activating protein 2 131 IPR038508 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00519 Vivi-Chr4 11492760 11500092 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00519 8 137 C2H2 Transcription Factor Family AT3G07940 32.143 6.41e-12 64.7