Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00516 ATGCGCATGAAGGAGGCATTGAAGGCCAAACTTTGCATAACTTGTGGGGGTCCTCCGATTGCTTCTAAAGAGCATGAACTTTCTATCCAAAAGATGGAAGAGCAAAACATCAGACTTAAAGAGGAGGTTGAGAAAGCTTCCACTCTTTTAGCAAGGTACACAAGAAAAGAGATATCACAACTCGAGTTTGAGCAATCTATTGCTCAAACAAAAGCATTTGCAAGAAATTTAGATATTGAAATTCCACTAAGACAAGAAACTGGTGGAAGTTCTAGTCATAATCACAATCATGCCATGCCAGTGAAAGAACCAAAATCAAGTGGTGATGTGGAAAAATCAATAATATCTCAAATTGCAGCTGTTGCAATGAATGAATTAGTGACACTTGTGCGTATCAATGAACCTTTTTGGGTGGACTCTTCTAGTGTGGAAGATGAGATATCAACTCTTTCTCATGAAATTTATGAGCAGACTTTTCCAAAACCAAATCACTTCAAAGGTGAAAATGTAGTTAAAGAATCATCAAAGTATACTTCACATGTCAACATCAATAGCATGGAATTAATTGACATGTTATTGGATCCGGTGAAATGGGCGAAGTTATTCCCAACGATTGTTTCGAAATCAGAAACAATTAAAGTGTTTGAAAATGGATTGATGGGAAATCGAGATGGAGCATTGCAATTGATGTATGAACAAATGCATATTCTCTCACCTCTTGTGCAACCTCGTGAATTTACCATCATTCGCTATTGTAAACAAATTGATGTTAGGACATGGGTGATAACAGATGTGTCATATGATTCTTCTCTACGAGAAATTAGTCCTCCTACTCGCTCTTGGAAACATCCGTCTGGATGCTTGATTCGTGAATTGTCTGTTGATTTTTGTTCGGTTACTTGGGTTGAACATGTGGAATTGGATGATAAGATGCATACACATCACCTATACAAATATCTTATTGATATCAATAATTTATATGGAGCAAAAAGTTGGATTAAAGAGCTTCAAAGAATGTGTGAAAAATCGGCCAGTTTCTATGTTCAAAGAATACCTGATCAAGAATCTGAAGGAGGTTACAATTTCTCAACTCTACTCTACAAATAA 1107 0.364 MRMKEALKAKLCITCGGPPIASKEHELSIQKMEEQNIRLKEEVEKASTLLARYTRKEISQLEFEQSIAQTKAFARNLDIEIPLRQETGGSSSHNHNHAMPVKEPKSSGDVEKSIISQIAAVAMNELVTLVRINEPFWVDSSSVEDEISTLSHEIYEQTFPKPNHFKGENVVKESSKYTSHVNINSMELIDMLLDPVKWAKLFPTIVSKSETIKVFENGLMGNRDGALQLMYEQMHILSPLVQPREFTIIRYCKQIDVRTWVITDVSYDSSLREISPPTRSWKHPSGCLIRELSVDFCSVTWVEHVELDDKMHTHHLYKYLIDINNLYGAKSWIKELQRMCEKSASFYVQRIPDQESEGGYNFSTLLYK 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00516 368 SUPERFAMILY Bet v1-like 110 343 - -
Vivi4g00516 368 Coils Coil 22 56 - -
Vivi4g00516 368 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 1 355 IPR042160 -
Vivi4g00516 368 CDD START_ArGLABRA2_like 112 341 - -
Vivi4g00516 368 Gene3D - 116 344 IPR023393 -
Vivi4g00516 368 ProSiteProfiles START domain profile. 108 345 IPR002913 GO:0008289
Vivi4g00516 368 Pfam START domain 118 342 IPR002913 GO:0008289
Vivi4g00516 368 SMART START_1 117 342 IPR002913 GO:0008289
Vivi4g00516 368 MobiDBLite consensus disorder prediction 85 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00516 Vivi-Chr4 11433749 11436087 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00516 3 348 Homeobox Transcription Factor Family AT1G73360 36.490 6.31e-76 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00516 K09338 - gmx:100795075 359.377