Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00489 ATGGCTATGCAATCACCTTCCTCTTCATTTTCCTATGGATTCACTTACCAGGTATTCCTCAGTTTCAGGGGCACTGACACTCGCTATGGTTTTACTGGAAATCTCTATAAGGCTCTTACCGACAAAGGAATCAACACCTTCATTGATGACAATGATCTTCAAAGAGGAGATGAAATCACACCATCACTCATAAAGGCTATTGAAGAGTCTAGGATTTTCATTCCTGTGTTTTCTGTCAACTATGCCTCTTCTTCGTTTTGTTTGGATGAACTTGTTCACATCATTCACTGCTTCAAGTCAAAAGGTCGTCTAGTTTTGCCTGTTTTCCATGGGGTGGAACCTACTCAGGTGCGCCATTGGAGTGGAAGTTATGGTGAAGCTTTGTCTAAGCATGAATATAGGTTCCAAAACAACAAACAAAACATGGAGCGGTTGCACCAATGGAAGATAGCTCTTAACCAAGCTGCTAACTTCTCCGGCTACCACTTTAGTCCCGGATCATATGAATACAAGTTTATCGGGGAAATAGTCAAATACATCTCTAACAAGATCAATCGCGTTCCTTTACACGTTGCCAATTACCCTGTTGGATTACAGTCCCGAGTACAACATGTGAAATCGCTTCTTGATAAGGGATCTGATGAAGGGGTCTACATGGTAGGACTCTATGGTACCGGAGGATTGGGCAAATCCACACTTGCAAAAGCAATATATAATTTTATTGCTGATCAATTTGATGGTTTGTGTTTCCTTCATAATGTGAGAGAGAATTCAACTAAAAATAAGTTGAAACATCTCCAGGAGGAGCTCCTTTTAAAAACAATTGGCTTGGAAGTTAGGTTAGGTGATACTAGTGAGGGAGTTCCAATCATAAAGGAAAGGTTGTGTAGAAAGAAGATTCTTTTGATTCTCGATGATGTTGATAATATCAAGCAACTGCATGTTTTGGCTGGAGGACTTGATTGGTTTGGTCGTGGAACTCGAGTCATTATTACCACTCGAGATAAACACATTTTAACTAGTCACGAGATAGAAAGCGTGTACGCAATGGAAGGGCTATATGGGATAGAAGCTCTTGAGTTGTTGAGGTGGATGGCTTTTAAAAATAACCAAGTTCCTTCAAGTTATGAAGAAATTTTAAACCGTGCAGTTACATATGCTTCGGGACATCCATTAGCTATAGAAATAATCGGCTCCAATTTATTTGGAAAGAGCATAGAAGAATGGAAGAATACATTAGAGGGATACGAAAAAATTCCCAATAAAGAGATCCAGAAGATACTTCGAATAAGCTACGATGCTTTGGAGGAAGAGGAACAAAGTGTTTTTCTAGACATTGCTTGTTGTTTCAAAGGGAGTATATGGGTGGAGGTCGAAAATATACTTCATGCGCATTATGGTCACTGTATAAAACATCATGTCGGAGTGTTGGCTGAAAAATCTCTCATAAAGATTAATTCTCATTGGGGACCTTATGTTGATGTGACATTACATGATTTGATAGAGGACATGGGTAAAGAAGTTGTCCGACAAGAATCACCTAAAGAACTTGGAGAACGTAGTAGGTTGTGGTATTACGATGATATAATCCTCGTTTTAAAAGAAAACACGGGAACTAGCAAAATTGAAATGATATATCTCGATTTCCCTTCAACGGAAGCAGTAATAGACTGGAATGGAAAAGCCTTCAAGAAGATGAAAAATCTCAGAACACTTATCATAAAAAATGGTCATTTTTCCAAAGGTTCTTGGTATCTTCCAAGTGGTTTGAGAGTATTAGAATGGCCAAGATATCCTTTAGGATGTATACCTTTTAGCATCTCAAACAAGACATTTGAGAAGATGAAAATTTTAAAACTTGACAATTGCGAATACTTAACAAATATATCTGACGTCTCGTGTCTCCCAAATTTAGAAATTTTTTCATTCAAAAAGTGCGAGAATTTAATTTCAATAGATGAGTCTATTGGCTTCCTCGATAAGCTTCAAATCTTGAATGCTGAGGGTTGTGACAAGTTATCGAGTTTTCCACCTTTAAAGTTGAACTCTCTTCGAGAGCTAGAACTTTCATTTTGTAAAATTCTCAAGAAATTTCCTGAAATATTGGACAAGATGAATAATATTAACAATATAACTTTGATAGACACTGGCATAAAAGAATTTCCATCTTCATTTCAAAATCTTACCGAACTTCATAACTTATCGATACGTGGACATGGAAAACTTATATTTCGAGGTAGCATTCCCATGATGTCAAATTTGTCCCAAGTTGATTTTGATGGTTATAGTCAGTTTGTCACAAAACCAAATGATGAACTGAGTTCCTTGTTGTCTTCCAATGTGAAAGAGATTATAATTCGAACAAGCAAACATAAATTTCTAGCAGTGACTCTTACCTTGTTTTCTAATGTGGAAACCTTAGACATATCCGGCAGCGATATCAAAATTCTTCCTGAATGCATAAAAAACTGTTGCTTTCTAAAGAGCATTTATTTGGATTATTGCCAATATCTTGAAGAAATAAGAGGGATTCCGCCAAATCTTAAATCATTGTCTGCATTGGGGTGCGAATCATTGACTTCATCGAGTAAAAGCATGCTAGTGAATCAGAAACTGCATGAAGCTGGAGGCACTGAGTTTCGTTTTCCATCGTCACGAAGTGAGTTGATTCCAGAGTGGTTTGAGCATCAAAGAAGAGAACAGTCTATTTCTTTTTCGTTCCGTAACAACTTCCCTTCCTTGGTTTTCTACTTGTCTATTATAAGATTGTATGAATGTAAGATTGTAGATTCAGGATTAAGAGTCTATTTGCTCATCAATGACTATGCCTATACTCTTGATCATCTTGAGTTTGGTAATCCTTTTGATATTCCAGGGAAATATACATATATATTTTCTTCTGATTGGAAAAACTGGTTAGAACTAGGGGACTATACACCAAAGGGACACCCAGAACTCAAATCTATGTTGGATGATGCACTTTTGAAAAATGAATGGATTCATGCTGAGGTTAAGATTATGATTTATTTGAATCCTGATTTGGATTCTGATTTGAATGATGAGGATATTGTTGTTGAAAGTGGAATCCATGTACTCAAAAACTTAACTAGCATGGATGATATTCAATTCAGTATTTCTTCCTTATCCAAAAAGAGAAAATTATATGAGTTTCTGAATGAATCAACATCAGAATGA 3195 0.3665 MAMQSPSSSFSYGFTYQVFLSFRGTDTRYGFTGNLYKALTDKGINTFIDDNDLQRGDEITPSLIKAIEESRIFIPVFSVNYASSSFCLDELVHIIHCFKSKGRLVLPVFHGVEPTQVRHWSGSYGEALSKHEYRFQNNKQNMERLHQWKIALNQAANFSGYHFSPGSYEYKFIGEIVKYISNKINRVPLHVANYPVGLQSRVQHVKSLLDKGSDEGVYMVGLYGTGGLGKSTLAKAIYNFIADQFDGLCFLHNVRENSTKNKLKHLQEELLLKTIGLEVRLGDTSEGVPIIKERLCRKKILLILDDVDNIKQLHVLAGGLDWFGRGTRVIITTRDKHILTSHEIESVYAMEGLYGIEALELLRWMAFKNNQVPSSYEEILNRAVTYASGHPLAIEIIGSNLFGKSIEEWKNTLEGYEKIPNKEIQKILRISYDALEEEEQSVFLDIACCFKGSIWVEVENILHAHYGHCIKHHVGVLAEKSLIKINSHWGPYVDVTLHDLIEDMGKEVVRQESPKELGERSRLWYYDDIILVLKENTGTSKIEMIYLDFPSTEAVIDWNGKAFKKMKNLRTLIIKNGHFSKGSWYLPSGLRVLEWPRYPLGCIPFSISNKTFEKMKILKLDNCEYLTNISDVSCLPNLEIFSFKKCENLISIDESIGFLDKLQILNAEGCDKLSSFPPLKLNSLRELELSFCKILKKFPEILDKMNNINNITLIDTGIKEFPSSFQNLTELHNLSIRGHGKLIFRGSIPMMSNLSQVDFDGYSQFVTKPNDELSSLLSSNVKEIIIRTSKHKFLAVTLTLFSNVETLDISGSDIKILPECIKNCCFLKSIYLDYCQYLEEIRGIPPNLKSLSALGCESLTSSSKSMLVNQKLHEAGGTEFRFPSSRSELIPEWFEHQRREQSISFSFRNNFPSLVFYLSIIRLYECKIVDSGLRVYLLINDYAYTLDHLEFGNPFDIPGKYTYIFSSDWKNWLELGDYTPKGHPELKSMLDDALLKNEWIHAEVKIMIYLNPDLDSDLNDEDIVVESGIHVLKNLTSMDDIQFSISSLSKKRKLYEFLNESTSE 1064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00489 1064 SUPERFAMILY L domain-like 511 869 - -
Vivi4g00489 1064 FunFam Disease resistance protein (TIR-NBS-LRR class) 13 186 - -
Vivi4g00489 1064 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 843 IPR044974 GO:0006952
Vivi4g00489 1064 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 446 IPR027417 -
Vivi4g00489 1064 Gene3D - 353 436 IPR042197 -
Vivi4g00489 1064 Pfam NB-ARC domain 200 435 IPR002182 GO:0043531
Vivi4g00489 1064 PRINTS Disease resistance protein signature 387 401 - -
Vivi4g00489 1064 PRINTS Disease resistance protein signature 679 695 - -
Vivi4g00489 1064 PRINTS Disease resistance protein signature 294 308 - -
Vivi4g00489 1064 PRINTS Disease resistance protein signature 219 234 - -
Vivi4g00489 1064 SMART AAA_5 216 351 IPR003593 GO:0016887
Vivi4g00489 1064 Gene3D Ribonuclease Inhibitor 536 881 IPR032675 -
Vivi4g00489 1064 Gene3D - 13 181 IPR035897 -
Vivi4g00489 1064 SMART till_3 15 158 IPR000157 GO:0007165
Vivi4g00489 1064 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 161 IPR035897 -
Vivi4g00489 1064 Pfam TIR domain 16 186 IPR000157 GO:0007165
Vivi4g00489 1064 Gene3D - 182 347 IPR027417 -
Vivi4g00489 1064 ProSiteProfiles TIR domain profile. 14 184 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00489 Vivi-Chr4 11201635 11208337 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00489 5 892 WRKY Transcription Factor Family AT4G12020 28.125 4.34e-71 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00489 - - vvo:131594476 1834.69