Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00488 ATGACTAAAGTAAAAGCACGAAGAGAGATTCCAAGGAAAGAAGGTCTTGAATTGTTGAGGTGGATGGCTTTCAAAAATAACAAAGTTCATTCAAGTTATGAGGACGTTTTAAACAGGGCTGTTGCTTATGCTTCTGGCTTTCCATTAGTTTTAGAAATAGTGGGTTCCAATTTGTTTGGAAAGTGCATAGAAGAATGGAAGTGTACATTAGATGGGTATGAAAAGATTCCCAATAAAGAGATCCAAAAGATACTTAAAGTAAGCTTTGATGCTTTGGAGGAAGAGGAACAAAGTGTGTTCCTAGATATTGCTTGTTGCTTTAAAGGTTGTAGTTTGACAGAGGTTGAAGAGATACTTCGTGCTCAGTATGGTGGCTCCATGACACATAGAATTCAAGTGTTGGCCGAAAAATCTCTCATTAAGATTGGTCATTTCGAGCAGAGTTGTATTTGTATTCTGACATTACATGACTTGATAGCGGACATGGGTAAAGAAATTGTCCGACAAAAATCACCCAAAAAACCTGAAAAACGCAGTAGGTTGTGGTTCCGAGAAGATATAATTCAAGTGTTAGAAAATAATACGGAAAATAGTGATATTGAAATCATATCTCTGGATTACGGCTCATCTGAAGCAGCAATAGATTGGAACGGAATGGCTTTCGGGAAGATGAAAAGGCTCACAACACTTATTATTAAAAGTGGTAATTTTTTCAAAGGCTCTATAGATTTTCCACGTAATTTGAGAGTATTAAAATGGCAAAAATATCACTCACAGTGTATTCCATACTGTTTTCTCAACAAGGTAAGTGAAATAAACTTATTTTTCAATCATGTATAA 840 0.356 MTKVKARREIPRKEGLELLRWMAFKNNKVHSSYEDVLNRAVAYASGFPLVLEIVGSNLFGKCIEEWKCTLDGYEKIPNKEIQKILKVSFDALEEEEQSVFLDIACCFKGCSLTEVEEILRAQYGGSMTHRIQVLAEKSLIKIGHFEQSCICILTLHDLIADMGKEIVRQKSPKKPEKRSRLWFREDIIQVLENNTENSDIEIISLDYGSSEAAIDWNGMAFGKMKRLTTLIIKSGNFFKGSIDFPRNLRVLKWQKYHSQCIPYCFLNKVSEINLFFNHV 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00488 279 Gene3D - 10 93 IPR042197 -
Vivi4g00488 279 SUPERFAMILY "Winged helix" DNA-binding domain 79 192 IPR036390 -
Vivi4g00488 279 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 272 IPR044974 GO:0006952
Vivi4g00488 279 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 103 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00488 Vivi-Chr4 11180629 11195643 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00488 13 279 WRKY Transcription Factor Family AT5G45050 29.592 8.12e-25 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00488 - - vvo:131596774 555.058