Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00486 ATGGCATCACCTCGTAGTAGTAGTTATTCCTTTATCTATATCGGGCTAAGGCATGACTGTGACGGTCTGCTGAGAGGAACTCAAACTGAAGCAAAAGAGAATCGGGCTAAAGGGAAAAAGATTAAGGAATCCTGCTGGTTGTATAGGCCATCCACCTCAACAATTCAAGAGCTTCAAGAGCTTCTATCCCATGTAGAGCTTTTAAAAAGTATGTACGAGATGAAAGGGCTATATGGGATAGAAGCTATTGAATTGTTGAGGTGGGTGGCATTTAAAAATAACCAAGTTCCTTCAAGTTATGAAGAAATTTTAAACCGTGCAGTTAGATATGCCTCTGGACTTCCGTTAGCTATAGAAATAATCGGGTCCAATTTATTTCGAAAGAGTATAGAGGAATGGAAGAATACATTAGAGGGGTACGAAAAGATTCCCAATAAAGAGATCCAGAAGATACTTCGAATAAGCTACGATGCTTTGGAGGAAGAGGAACAAAGTGTTTTTCTAGACATTGCTTGTTGTTTCAAAGGGAGTATACAGGTGGAAGTCGAAAATATACTTCATGCGCATTATGGTCACTGTATAAAACATCATGTTGGAGTGTTAGCAGAAAAATCTCTCATAAAGATTAATTCTCATGGGAGACCTTATGTTAAAGTGACATTACATGATTTGATAGAGGACATGGGTAAAGAAGTCGTCCGACAAGAATCACCTAAAGAACTTGGAGAACGTAGTAGGTTGTGGCATTACGATGATATAATTCAGGTCTTAAAAGAAAAAACTGTGAGTAAGATTGATATTTATGAACATTGTTCTTTTTAG 822 0.3759 MASPRSSSYSFIYIGLRHDCDGLLRGTQTEAKENRAKGKKIKESCWLYRPSTSTIQELQELLSHVELLKSMYEMKGLYGIEAIELLRWVAFKNNQVPSSYEEILNRAVRYASGLPLAIEIIGSNLFRKSIEEWKNTLEGYEKIPNKEIQKILRISYDALEEEEQSVFLDIACCFKGSIQVEVENILHAHYGHCIKHHVGVLAEKSLIKINSHGRPYVKVTLHDLIEDMGKEVVRQESPKELGERSRLWHYDDIIQVLKEKTVSKIDIYEHCSF 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00486 273 Pfam NB-ARC domain 75 159 IPR002182 GO:0043531
Vivi4g00486 273 SUPERFAMILY "Winged helix" DNA-binding domain 146 258 IPR036390 -
Vivi4g00486 273 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 59 170 IPR027417 -
Vivi4g00486 273 Gene3D - 77 160 IPR042197 -
Vivi4g00486 273 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 62 257 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00486 Vivi-Chr4 11169932 11172686 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00486 68 260 WRKY Transcription Factor Family AT5G45050 30.612 3.42e-22 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00486 - - vvo:131596770 551.592