LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi4g00485	ATGGCTATGCATTCACTTTCTTATGGATTCACTTACCAGGTATTCCTCAGTTTCAGGGGCACTGACACTCGCTATGGTTTTACTGGAAATCTCTATAAGGCTCTTACCGACAAAGGAATCAACACCTTCATTGATGACTATGATCTTCAAAGTGGAGATGAAATCACACCATCACTCATAAAGGCTATTCAAGAGTCTAGGATTTTCATTCCTGTGTTTTCTGTCAACTATGCCTCTTCTTCATTTTGTTTGGATGAACTTGTCCACATCATTCAATACTTCAAGTCAGAGGGTCGTCTAGTTTTGCCTGTTTTCTATGGGGTCGAACCTACTCATGTGCGGCATCAGAGTGGAAGTTATGGCGAAGCATTGGCCAAGCATGAAGAGAGGTTCCAAAATAACATGCAAAACATGGAGCGGTTGCATCAATGGAAGATAGCTCTTAACCAAGCTGCTAACTTGTCCGGCTACCACTTTAGTCCCGGAAAGAATATATATGAATACAAGTTAATTGCGGAAATAGTCAAAAACATCTCTAACAAGATCAATCACGTTCCTTTACACGTTGCCGATTACCTTGTTGGATTACAGTCCCGAGTACAACATGTGAAATCACTACTTGATAAGGGATCTGATGAAGGGGTCTACATGGTAGGACTCTATGGTACCGGAGGCTTGGGCAAATCCACACTTGCAAAAGCAATATATAATTTTATTGCTGATCAATTTGAAGGTTTGTGTTTCCTTCATAATGTGAGAGAGAATTCAGTTAAAAATAACATGAAACATCTCCAGGAGGAGCTCCTTTTGAAAACAATTGACTTGGAAGTTAAGTTAAGAGATGTTAGTGAGGGAATTCCAATCATAAAGGAAAGGTTATGTAGAAAGAAGATTCTTTTGATTCTCGATGATGTTGATAATATCAAGCAACTGCAAGTTTTGGCTGGAGGACTTGATTGGTTTGGTCGTGGAACTCGAGTCATTGTTACCACTCGAGATAAACACTTATTAACTAGTCATGAGATAAAAAGCGTGTACGAAATGGAAGGGCTATATGGGATAGAAGCTCTTGAATTGTTGAGGTGGGTGGCTTTTAAAAATAACCAAGTTCCTTCAAGTTATGAAAAAATTTTAAACCGTGCAGTTACATATGCCTCTGGACTTCCATTAGCTATAAAAATAATCGGCTCCAATTTATTTGGAAAGAGCATAGAAGAATGGAAGAATACATTGGAGGGGTACGAAAAAATTCCCAATAAAGAGATCCAGAAGATACTTCGAATAAGCTACGATGATTTGGAGGAAGAGGAACAAAGTGTTTTTCTAGACATTGCTTGTTGTTTCAAAGGGAGTAGATGGGCGGAGGTCGAAAATATACTTCATGCACATTATGGTCACTGTATAAAACATCATGTTGTAGTGTTGGCTGAAAAATCTCTCATAAAGATTAATTCTCATTGGTGGCCTTATGTTGAAGTGACATTACATGATTTAATAGAGGACATGGGTAAAGAAGTCGTCCGACAAGAATCACCCAAAGAACTTGGAGAACGTAGTAGGTTGTGGTATTACAAGGATATAATTCATGTCTTAAAAGAAAACATTGGAACTAGCAAAATTGAAATGATATATCTCGATTTCCCTTCAACGGAAGCAATAATAGACTGGAATGGAAAAGCCTTTAAGAAGATGAAAAATCTCAAAACACTTATCATAAAAAATGGTCATTTTTCTAAAGGTGCCCGACATCTTCCAAGTGGTCTGGGAGTATTAGAATGGCAAAGATATCCTTTAGGATGTATACCTTTTAGCATTTCGAACAAGACATTTGAGAAGATGAAAATTTTAAAACTTGACAATTGTGAATACTTAACAAATATAACTGACGTCTCGTGTCTCCCAAATTTAGAAATTTTTTCATTCAAAAAGTGCGAGAATTTAATTTCAATTGACGAGTCTATTGGGTTCCTCAATAAGCTCCAAATCTTGAATGCTGAGGGTTGTGACAAGTTATCGAGTTTTCCACCTTTAAAGTTGAACTCTCTTCTAGTGCTAGAACTTTCATTATGTTCCAGTCTCACGAAATTTCCTGAAATATTGGACAAGATGAATAACATCAGCACTATAACTTTGAGAGACACTGGCATAAAAGAATTTCCATCCTCATTTCAAAATCTTACCAAACTTTATAGCTTATATATACATGGACATGGAAAACTTATATTTCCAAGTAGCATTCCCATGATGTCAAAGTTGTTCGAAGTTGTAATTAATGGTTATAGTCAGTTAGTCACAAAACCGAATGATGAACTGAGTTCCTTGTTGTCTTCCAATGTGAAAAATATTGAAATTCAAACAAGCAAACATAAATTTCTAGCAGTGACTCTTACCTTGTTTTCTAATGTGGAAACCTTAGACATATCCTACAGCGATATCAAAATTCTTCCTGAATGCATAAAAATATGTTGCTTTCTAAAGAACATTTATTTGGATGATTGCGTATATCTTGAAGAAATAAGAGGGATTCCGCCAAATCTTAAAAGATTTTCATTGGGGAGCGAATTATTGACTTCATCGAGTAAAATCATGCTAGTGAATCAGGAACTGCATGAAGCTGGAGGCACTGAGTTTCGTTTCCCATCATCCCAAAGCGAGTTGATTCCGGAGTGGTTTGAGCATCAAAGTAGAGAACTGTCTATTTCTTTTTCATTCCGTAACAACTTGCCTTCCTTGGTTTTCTACTTTTCTATTATAAGAATGCCTGAATGGTTCTTTTGGACAGATTCGAGATTAAGAGTCAATTTGCTCATCAATGACTATGTATATACTACTCCTGATCATCTTAATATTGGTAATTCTATGGAAGATCTAGAGGAATATACATATATATTTTCTTCTGATTGGAAAAACTGGTTAGAACAATGGGTCTATACACCAAAGGGACACCCAGAACTCAAATCTATGTTGGATGATGCACTATTGAAAAATGAATGGATTCATGCTGAAGTTAAGATTGTGATTGATTTGGACTCTGATTCAGATTCTGATTTGAATGATGAGGATATTGTCGTTGAAAGTGGAATCCATGTACTCAAAAACTTAACTAGCATGGATGATATTCAATTCAGTATTTCTTCCTTATCCAAAAAGAGAAAATTAGATGAGTTTTTGAATGAATCAACATCAGAATGA	3192	0.3618	MAMHSLSYGFTYQVFLSFRGTDTRYGFTGNLYKALTDKGINTFIDDYDLQSGDEITPSLIKAIQESRIFIPVFSVNYASSSFCLDELVHIIQYFKSEGRLVLPVFYGVEPTHVRHQSGSYGEALAKHEERFQNNMQNMERLHQWKIALNQAANLSGYHFSPGKNIYEYKLIAEIVKNISNKINHVPLHVADYLVGLQSRVQHVKSLLDKGSDEGVYMVGLYGTGGLGKSTLAKAIYNFIADQFEGLCFLHNVRENSVKNNMKHLQEELLLKTIDLEVKLRDVSEGIPIIKERLCRKKILLILDDVDNIKQLQVLAGGLDWFGRGTRVIVTTRDKHLLTSHEIKSVYEMEGLYGIEALELLRWVAFKNNQVPSSYEKILNRAVTYASGLPLAIKIIGSNLFGKSIEEWKNTLEGYEKIPNKEIQKILRISYDDLEEEEQSVFLDIACCFKGSRWAEVENILHAHYGHCIKHHVVVLAEKSLIKINSHWWPYVEVTLHDLIEDMGKEVVRQESPKELGERSRLWYYKDIIHVLKENIGTSKIEMIYLDFPSTEAIIDWNGKAFKKMKNLKTLIIKNGHFSKGARHLPSGLGVLEWQRYPLGCIPFSISNKTFEKMKILKLDNCEYLTNITDVSCLPNLEIFSFKKCENLISIDESIGFLNKLQILNAEGCDKLSSFPPLKLNSLLVLELSLCSSLTKFPEILDKMNNISTITLRDTGIKEFPSSFQNLTKLYSLYIHGHGKLIFPSSIPMMSKLFEVVINGYSQLVTKPNDELSSLLSSNVKNIEIQTSKHKFLAVTLTLFSNVETLDISYSDIKILPECIKICCFLKNIYLDDCVYLEEIRGIPPNLKRFSLGSELLTSSSKIMLVNQELHEAGGTEFRFPSSQSELIPEWFEHQSRELSISFSFRNNLPSLVFYFSIIRMPEWFFWTDSRLRVNLLINDYVYTTPDHLNIGNSMEDLEEYTYIFSSDWKNWLEQWVYTPKGHPELKSMLDDALLKNEWIHAEVKIVIDLDSDSDSDLNDEDIVVESGIHVLKNLTSMDDIQFSISSLSKKRKLDEFLNESTSE	1063

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi4g00485	1063	PRINTS	Disease resistance protein signature	217	232	-	-
	Vivi4g00485	1063	PRINTS	Disease resistance protein signature	385	399	-	-
	Vivi4g00485	1063	PRINTS	Disease resistance protein signature	677	693	-	-
	Vivi4g00485	1063	PRINTS	Disease resistance protein signature	292	306	-	-
	Vivi4g00485	1063	Pfam	TIR domain	12	186	IPR000157	GO:0007165
	Vivi4g00485	1063	Gene3D	-	10	182	IPR035897	-
	Vivi4g00485	1063	SMART	AAA_5	214	347	IPR003593	GO:0016887
	Vivi4g00485	1063	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	180	444	IPR027417	-
	Vivi4g00485	1063	SUPERFAMILY	"Winged helix" DNA-binding domain	420	532	IPR036390	-
	Vivi4g00485	1063	Gene3D	-	351	434	IPR042197	-
	Vivi4g00485	1063	Gene3D	Ribonuclease Inhibitor	525	878	IPR032675	-
	Vivi4g00485	1063	SUPERFAMILY	L domain-like	511	862	-	-
	Vivi4g00485	1063	Gene3D	-	183	346	IPR027417	-
	Vivi4g00485	1063	ProSiteProfiles	TIR domain profile.	10	182	IPR000157	GO:0007165
	Vivi4g00485	1063	SMART	till_3	11	154	IPR000157	GO:0007165
	Vivi4g00485	1063	Pfam	NB-ARC domain	198	432	IPR002182	GO:0043531
	Vivi4g00485	1063	SUPERFAMILY	Toll/Interleukin receptor TIR domain	6	157	IPR035897	-
	Vivi4g00485	1063	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	12	782	IPR044974	GO:0006952
	Vivi4g00485	1063	FunFam	Disease resistance protein (TIR-NBS-LRR class)	9	184	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi4g00485	Vivi-Chr4	11164143	11168259	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi4g00485	9	860	WRKY Transcription Factor Family	AT4G12020	28.697	1.80e-70	256

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi4g00485	-		-	vvo:131594476	1739.93