Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00484 ATGGCTATGCATTCATTTTCTTATGGATTCACTTACCAGGTATTCCTCAGTTTCAGGGGCACTGACACTCGCTATGGTTTTACTGGAAATCTCTATAAGGCTCTTACCGACAAAGGAATCAACACCTTCATTGATGACAATGATCTTCAAAGTGGAGATGAAATCACACCATCACTCATAAAGGCTATTCAAGAGTCTAGGATTTTCATTCCTGTGTTTTCTGTCAACTATGCCTCTTCTTCTTTTTGTTTGGATGAACTTGTCCACATCATTCATTGCTTCAAGTCAAAGGGTCGTCTAGTTTTGCCGGTTTTCTATGGGGTGGAACCTACTCATGTGCGGCATCAGAGTGAAAGTTATGGCAAAGCATTGGCTGAGCATGAAGAGAGGTTCAAAAATAACAAGCAAAACATGGAGCGGTTGCACCAATGGAAGATAGCTCTTAACCAAGCTGCTAACTTGTCCGGCTACCACTTTAGTCCCGGATCATATGAATATGAATACAAGATTATCGGGGAAATAGTCAAATACATCTCTAACAAGATCAATCGCGTTCCTTTACACGTTGCCGATTACCCTGTTGGATTACAGTCCCGAGTACAACATGTGAAATCTCTACTTGATAAGGGATCTGATGAAGGGGTCTACATGGTAGGACTCTATGGTACCGGAGGCTTGGGCAAATCCACACTTGCAAAAGCAGTATATAATTTTATTGCTGATCAATTTGAAGGTTTGTGTTTCCTTCATAATGTGAGAGAGAATTCATCTAAAAATAACTTGAAACATCTCCAGGAGGAGTTCCTTTTGAAAACAATTGGTTTGGAAGTTAAGATAGGAGATACTAGTGAGGGAATTCCAATCATAAAGGAAAGGTTGTGTAGAAAGAAGATTCTTTTGATTCTTGATAATGTTGACAATATCAAACAACTACAAGTTTTGGCTGGAGGACTTGATTGGTTTGGTCGTGGAACTCGAGTCATTGTTACCACTCGAGATAAGCACTTATTAACTAGTCACGAGATAGAAAGCGTGTACGAGATGAAAGGGCTATATGGAATAGAAGCACTTGAATTGTTGAGGTGGATGGCATTTAAAAATAACCAAGTTCCTTCAAGTTATGAAGAAATTTTAAACCGTGCAGTTACATATGCCTCTGGACTTCCATTAGCTATAGAAATAATCGGCTCCAATTTAATTGGAAAGAGCATAGAAGAATGGAAGAATACATTAGAGGGGTACGAAAAGATTCCCAATAAAGAGATCCAGAAAATACTTCGAATAAGCTACGATGCTTTGGAGGAAGAGGAACAAAGTGTTTTTCTAGACCTTGCTTGTTGTTTCAGAGGGAGTATATGGGCGGAGGTCGAAATAATACTTCATGCGCATTATGGTCACTCTATAAAACATCATCTTGGAGTGTTGGCTGAAAAATCTCTCATAAAGATTAATTATGATGAAGTGACATTACATGATTTGATAGAGGACATGGGTAAAGAAGTCGTCCGACAAGAATCACCAAAAGAACTTGGAGAACGTAGTAGGTTGTGGTATTACGAGGATACAATTCATGTCTTAAAAGAAAACACTGGAACTAGCAAAATTGAAATGATATATCTCAATTACCCTTCAACGGAAGCAATAATAGACTGGAATGGAAAAGCCTTCAAGAAGATGAAAAATCTCAAAACACTTATCATAAAAAATGGTCATTTTTCCAAAGGTGCCCAACATCTTCCAAGTGGTCTGAGAGTATTAGAATGGCAAAGATATCCTTCAGGATGTATACCTTTTAGCATTTCAAACAAGACATTTGAGAAGATGAAAATTTTAAAATTTGACAATTGTGAATACTTAACAAATATATCTGACATCTCGTGTCTCCCAAATTTAGAAATTTTTTCATTCAAAAACTGTGAGAATTTAATTTCAATTGATGAGTCTATTGGGTTCCTCAATAAGCTCCAAATCTTGAATGCTAAGGGTTGTGACAAGTTATCGAGTTTTCCACCTTTAAGGCTGAACTCTCTTCGAGAGCTACAACTTTCATTTTGTACAAGTCTCACGAAATTTCCTGAAATATTGGACAAGATGAATAATATCAACAATATAACTTTGTTCAGTAGTGGCATAAAAGAATTTCCATCTTCATTTCAAAATCTTACCGAACTTCATAACTTATCGATAAGTGGACATGGAAAACTTATATTTCCAAGTAGCATTCCCATGATGTCAAATTTGTCCCAAGTTAATTTTGATGGTTATAGTCAGTTTGTCACAAAACCAAATGATGAACTGAGTTCCTTGTTGTCTTCCAATGTGAAAGAGATTATAATTCGAACAAGCAAACATAAATTTCTAGCAGTGACTCTTACCTTGTTTTCTAATGTGGAAACCTTAGACATATCCGGCAGCGATATCAAAATTCTTCCTGAATGCATAAAAAACTGTTGCTTTCTAAAGAGCATTTATTTGGATTATTGCCAATATCTTGAAGAAATAAGAGGGATTCCGCCAAATCTTAAATCATTGTCTGCATTGGGGTGCGAATCATTGACTTCATCGAGTAAAAGCATGCTAGTGAATCAGAAACTGCATGAAGCTGGAGGCACTGAGTTTCGTTTTCCATCGTCACAAACTGAGAGGATTCCGGAGTGGTTTGAGCATCAAAGAAGAGAACATTCGATTTCTTTTTCGTTCCGTAACAACTTGCCTTCCTTGGTTTTCTACTTTTCTCTTATAAGAATGCATGAATGGATCCTTGGGGTAGGATTAAGAGTCTTTTTGCTCATCAATGACTATGCATATGCTCTTGATGTTCTTAAGTTTAGTAATTCTTGTGATATTCCAAGGAAATCTACATATATATTTTCTTCTGATTGGAAAAACTGGTTAGAACTAGGAGACTATATACCAAAGGGACTCAAATCTATGTTGGATGATGCACTATTGAAAAATGAATGGATTCATGCTGAAGTTACGATTGCGATTGAATTGAATGAGGGTATTGCTGAAAGTGGAATCCATGTAATGAAACAGTTAACTAGCGTGGATGATATTCAATTCACTAATTCTTCCTTATCCAAAAAGAGAAAATTAGATGAGTTTCTGAATGAATCAACATCAGAATGA 3132 0.3662 MAMHSFSYGFTYQVFLSFRGTDTRYGFTGNLYKALTDKGINTFIDDNDLQSGDEITPSLIKAIQESRIFIPVFSVNYASSSFCLDELVHIIHCFKSKGRLVLPVFYGVEPTHVRHQSESYGKALAEHEERFKNNKQNMERLHQWKIALNQAANLSGYHFSPGSYEYEYKIIGEIVKYISNKINRVPLHVADYPVGLQSRVQHVKSLLDKGSDEGVYMVGLYGTGGLGKSTLAKAVYNFIADQFEGLCFLHNVRENSSKNNLKHLQEEFLLKTIGLEVKIGDTSEGIPIIKERLCRKKILLILDNVDNIKQLQVLAGGLDWFGRGTRVIVTTRDKHLLTSHEIESVYEMKGLYGIEALELLRWMAFKNNQVPSSYEEILNRAVTYASGLPLAIEIIGSNLIGKSIEEWKNTLEGYEKIPNKEIQKILRISYDALEEEEQSVFLDLACCFRGSIWAEVEIILHAHYGHSIKHHLGVLAEKSLIKINYDEVTLHDLIEDMGKEVVRQESPKELGERSRLWYYEDTIHVLKENTGTSKIEMIYLNYPSTEAIIDWNGKAFKKMKNLKTLIIKNGHFSKGAQHLPSGLRVLEWQRYPSGCIPFSISNKTFEKMKILKFDNCEYLTNISDISCLPNLEIFSFKNCENLISIDESIGFLNKLQILNAKGCDKLSSFPPLRLNSLRELQLSFCTSLTKFPEILDKMNNINNITLFSSGIKEFPSSFQNLTELHNLSISGHGKLIFPSSIPMMSNLSQVNFDGYSQFVTKPNDELSSLLSSNVKEIIIRTSKHKFLAVTLTLFSNVETLDISGSDIKILPECIKNCCFLKSIYLDYCQYLEEIRGIPPNLKSLSALGCESLTSSSKSMLVNQKLHEAGGTEFRFPSSQTERIPEWFEHQRREHSISFSFRNNLPSLVFYFSLIRMHEWILGVGLRVFLLINDYAYALDVLKFSNSCDIPRKSTYIFSSDWKNWLELGDYIPKGLKSMLDDALLKNEWIHAEVTIAIELNEGIAESGIHVMKQLTSVDDIQFTNSSLSKKRKLDEFLNESTSE 1043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00484 1043 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 444 IPR027417 -
Vivi4g00484 1043 Pfam TIR domain 12 184 IPR000157 GO:0007165
Vivi4g00484 1043 Pfam NB-ARC domain 198 433 IPR002182 GO:0043531
Vivi4g00484 1043 Gene3D - 351 434 IPR042197 -
Vivi4g00484 1043 Gene3D Ribonuclease Inhibitor 520 900 IPR032675 -
Vivi4g00484 1043 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 157 IPR035897 -
Vivi4g00484 1043 SMART till_3 11 154 IPR000157 GO:0007165
Vivi4g00484 1043 FunFam Disease resistance protein (TIR-NBS-LRR class) 9 184 - -
Vivi4g00484 1043 ProSiteProfiles TIR domain profile. 10 182 IPR000157 GO:0007165
Vivi4g00484 1043 SUPERFAMILY L domain-like 506 862 - -
Vivi4g00484 1043 Gene3D - 9 179 IPR035897 -
Vivi4g00484 1043 PRINTS Disease resistance protein signature 292 306 - -
Vivi4g00484 1043 PRINTS Disease resistance protein signature 217 232 - -
Vivi4g00484 1043 PRINTS Disease resistance protein signature 672 688 - -
Vivi4g00484 1043 PRINTS Disease resistance protein signature 385 399 - -
Vivi4g00484 1043 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 703 IPR044974 GO:0006952
Vivi4g00484 1043 Gene3D - 180 345 IPR027417 -
Vivi4g00484 1043 SUPERFAMILY "Winged helix" DNA-binding domain 420 527 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00484 Vivi-Chr4 11154071 11158440 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00484 6 754 WRKY Transcription Factor Family AT4G12020 28.500 6.84e-72 260