LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi4g00483	ATGGCTATGCATTCATTTTCTTATGGATTCACTTACCAGGTATTCCTCAGTTTCAGGGGCACTGACACTCGCTATGGTTTTACTGGAAATCTCTATAAGGCTCTTACCGACAAAGGAATCAACACCTTCATTGATGACAATGATCTTCAAAGTGGAGATGAAATCACACCATCACTCATAAAGGCTATTCAAGAGTCTAGGATTTTCATTCCTGTGTTTTCTGTCAACTATGCCTCTTCTTCTTTTTGTTTGGATGAACTTGTCCACATCATTCATTGCTTCAAGTCAAAGGGTCGTCTAGTTTTGCCGGTTTTCTATGGGGTGGAACCTACTCATGTGCGGCATCAGAGTGAAAGTTATGGCAAAGCATTGGCTGAGCATGAAGAGAGGTTCAAAAATAACAAGCAAAACATGGAGCGGTTGCACCAATGGAAGATAGCTCTTAACCAAGCTGCTAACTTGTCCGGCTACCACTTTAGTCCCGGATCATATGAATATGAATACAAGATTATCGGGGAAATAGTCAAATACATCTCTAACAAGATCAATCGCGTTCCTTTACACGTTGCCGATTACCCTGTTGGATTACAGTCCCGAGTACAACATGTGAAATCTCTACTTGATAAGGGATCTGATGAAGGGGTCTACATGGTAGGACTCTATGGTACCGGAGGCTTGGGCAAATCCACACTTGCAAAAGCAGTATATAATTTTATTGCTGATCAATTTGAAGGTTTGTGTTTCCTTCATAATGTGAGAGAGAATTCATCTAAAAATAACTTGAAACATCTCCAGGAGGAGTTCCTTTTGAAAACAATTGGTTTGGAAGTTAAGATAGGAGATACTAGTGAGGGAATTCCAATCATAAAGGAAAGGTTGTGTAGAAAGAAGATTCTTTTGATTCTTGATAATGTTGACAATATCAAACAACTACAAGTTTTGGCTGGAGGACTTGATTGGTTTGGTCGTGGAACTCGAGTCATTGTTACCACTCGAGATAAGCACTTATTAACTAGTCACGAGATAGAAAGCGTGTACGAGATGAAAGGGCTATATGGAATAGAAGCACTTGAATTGTTGAGGTGGATGGCATTTAAAAATAACCAAGTTCCTTCAAGTTATGAAGAAATTTTAAACCGTGCAGTTACATATGCCTCTGGACTTCCATTAGCTATAGAAATAATCGGCTCCAATTTAATTGGAAAGAGCATAGAAGAATGGAAGAATACATTAGAGGGGTACGAAAAGATTCCCAATAAAGAGATCCAGAAAATACTTCGAATAAGCTACGATGCTTTGGAGGAAGAGGAACAAAGTGTTTTTCTAGACCTTGCTTGTTGTTTCAGAGGGAGTATATGGGCGGAGGTCGAAATAATACTTCATGCGCATTATGGTCACTCTATAAAACATCATCTTGGAGTGTTGGCTGAAAAATCTCTCATAAAGATTAATTATGATGAAGTGACATTACATGATTTGATAGAGGACATGGGTAAAGAAGTCGTCCGACAAGAATCACCAAAAGAACTTGGAGAACGTAGTAGGTTGTGGTATTACGAGGATACAATTCATGTCTTAAAAGAAAACACTGGAACTAGCAAAATTGAAATGATATATCTCAATTACCCTTCAACGGAAGCAATAATAGACTGGAATGGAAAAGCCTTCAAGAAGATGAAAAATCTCAAAACACTTATCATAAAAAATGGTCATTTTTCCAAAGGTGCCCAACATCTTCCAAGTGGTCTGAGAGTATTAGAATGGCAAAGATATCCTTCAGGATGTATACCTTTTAGCATTTCAAACAAGGTAATACATTTATTTTTTATCATGCATATTTATAAATTCATAAGAGATTATTTATTTGACTATTATATGTTTTGTTTTTTGTTTATGCAGACATTTGAGAAGATGAAAATTTTAAAATTTGACAATTGTGAATACTTAACAAATATATCTGACATCTCGTGTCTCCCAAATTTAGAAATTTTTTCATTCAAAAACTGTGAGAATTTAATTTCAATTGATGAGTCTATTGGGTTCCTCAATAAGCTCCAAATCTTGAATGCTAAGGGTTGTGACAAGTTATCGAGTTTTCCACCTTTAAGGCTGAACTCTCTTCGAGAGCTACAACTTTCATTTTGTACAAGTCTCACGAAATTTCCTGAAATATTGGACAAGATGAATAATATCAACAATATAACTTTGTTCAGTAGTGGCATAAAAGAATTTCCATCTTCATTTCAAAATCTTACCGAACTTCATAACTTATCGATAAGTGGACATGGAAAACTTATATTTCCAAGTAGCATTCCCATGATGTCAAATTTGTCCCAAGTTAATTTTGATGGTTATAGTCAGTTTGTCACAAAACCAAATGATGAACTGAGTTCCTTGTTGTCTTCCAATGTGAAAGAGATTATAATTCGAACAAGCAAACATAAATTTCTAGCAGTGACTCTTACCTTGTTTTCTAATGTGGAAACCTTAGACATATCCGGCAGCGATATCAAAATTCTTCCTGAATGCATAAAAAACTGTTGCTTTCTAAAGAGCATTTATTTGGATTATTGCCAATATCTTGAAGAAATAAGAGGGATTCCGCCAAATCTTAAATCATTGTCTGCATTGGGGTGCGAATCATTGACTTCATCGAGTAAAAGCATGCTAGTGAATCAGAAACTGCATGAAGCTGGAGGCACTGAGTTTCGTTTTCCATCGTCACAAACTGAGAGGATTCCGGAGTGGTTTGAGCATCAAAGAAGAGAACATTCGATTTCTTTTTCGTTCCGTAACAACTTGCCTTCCTTGGTTTTCTACTTTTCTCTTATAAGAATGCATGAATGGATCCTTGGGGTAGGATTAAGAGTCTTTTTGCTCATCAATGACTATGCATATGCTCTTGATGTTCTTAAGTTTAGTAATTCTTGTGATATTCCAAGGAAATCTACATATATATTTTCTTCTGATTGGAAAAACTGGTTAGAACTAGGAGACTATATACCAAAGGGACTCAAATCTATGTTGGATGATGCACTATTGAAAAATGAATGGATTCATGCTGAAGTTACGATTGCGATTGAATTGAATGAGGGTATTGCTGAAAGTGGAATCCATGTAATGAAACAGTTAACTAGCGTGGATGATATTCAATTCACTAATTCTTCCTTATCCAAAAAGAGAAAATTAGATGAGTTTCTGAATGAATCAACATCAGAATGA	3222	0.361	MAMHSFSYGFTYQVFLSFRGTDTRYGFTGNLYKALTDKGINTFIDDNDLQSGDEITPSLIKAIQESRIFIPVFSVNYASSSFCLDELVHIIHCFKSKGRLVLPVFYGVEPTHVRHQSESYGKALAEHEERFKNNKQNMERLHQWKIALNQAANLSGYHFSPGSYEYEYKIIGEIVKYISNKINRVPLHVADYPVGLQSRVQHVKSLLDKGSDEGVYMVGLYGTGGLGKSTLAKAVYNFIADQFEGLCFLHNVRENSSKNNLKHLQEEFLLKTIGLEVKIGDTSEGIPIIKERLCRKKILLILDNVDNIKQLQVLAGGLDWFGRGTRVIVTTRDKHLLTSHEIESVYEMKGLYGIEALELLRWMAFKNNQVPSSYEEILNRAVTYASGLPLAIEIIGSNLIGKSIEEWKNTLEGYEKIPNKEIQKILRISYDALEEEEQSVFLDLACCFRGSIWAEVEIILHAHYGHSIKHHLGVLAEKSLIKINYDEVTLHDLIEDMGKEVVRQESPKELGERSRLWYYEDTIHVLKENTGTSKIEMIYLNYPSTEAIIDWNGKAFKKMKNLKTLIIKNGHFSKGAQHLPSGLRVLEWQRYPSGCIPFSISNKVIHLFFIMHIYKFIRDYLFDYYMFCFLFMQTFEKMKILKFDNCEYLTNISDISCLPNLEIFSFKNCENLISIDESIGFLNKLQILNAKGCDKLSSFPPLRLNSLRELQLSFCTSLTKFPEILDKMNNINNITLFSSGIKEFPSSFQNLTELHNLSISGHGKLIFPSSIPMMSNLSQVNFDGYSQFVTKPNDELSSLLSSNVKEIIIRTSKHKFLAVTLTLFSNVETLDISGSDIKILPECIKNCCFLKSIYLDYCQYLEEIRGIPPNLKSLSALGCESLTSSSKSMLVNQKLHEAGGTEFRFPSSQTERIPEWFEHQRREHSISFSFRNNLPSLVFYFSLIRMHEWILGVGLRVFLLINDYAYALDVLKFSNSCDIPRKSTYIFSSDWKNWLELGDYIPKGLKSMLDDALLKNEWIHAEVTIAIELNEGIAESGIHVMKQLTSVDDIQFTNSSLSKKRKLDEFLNESTSE	1073

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi4g00483	1073	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	12	733	IPR044974	GO:0006952
	Vivi4g00483	1073	Gene3D	-	9	179	IPR035897	-
	Vivi4g00483	1073	PRINTS	Disease resistance protein signature	217	232	-	-
	Vivi4g00483	1073	PRINTS	Disease resistance protein signature	292	306	-	-
	Vivi4g00483	1073	PRINTS	Disease resistance protein signature	702	718	-	-
	Vivi4g00483	1073	PRINTS	Disease resistance protein signature	385	399	-	-
	Vivi4g00483	1073	Gene3D	-	180	345	IPR027417	-
	Vivi4g00483	1073	Pfam	TIR domain	12	184	IPR000157	GO:0007165
	Vivi4g00483	1073	Gene3D	-	351	434	IPR042197	-
	Vivi4g00483	1073	SMART	till_3	11	154	IPR000157	GO:0007165
	Vivi4g00483	1073	FunFam	Disease resistance protein (TIR-NBS-LRR class)	9	184	-	-
	Vivi4g00483	1073	Gene3D	Ribonuclease Inhibitor	533	729	IPR032675	-
	Vivi4g00483	1073	ProSiteProfiles	TIR domain profile.	10	182	IPR000157	GO:0007165
	Vivi4g00483	1073	SUPERFAMILY	Toll/Interleukin receptor TIR domain	6	157	IPR035897	-
	Vivi4g00483	1073	Pfam	NB-ARC domain	198	433	IPR002182	GO:0043531
	Vivi4g00483	1073	SUPERFAMILY	"Winged helix" DNA-binding domain	420	527	IPR036390	-
	Vivi4g00483	1073	Gene3D	Ribonuclease Inhibitor	730	898	IPR032675	-
	Vivi4g00483	1073	SUPERFAMILY	L domain-like	506	892	-	-
	Vivi4g00483	1073	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	179	444	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi4g00483	Vivi-Chr4	11154070	11158440	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi4g00483	6	784	WRKY Transcription Factor Family	AT4G12020	28.767	6.02e-71	258

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi4g00483	-		-	vvo:131594476	2158.26