Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00480 ATGGCTAGGCAATCACCTACCTCTTCATTTTCCTATGAATTCACTTACCAAGTATTCCTCAGTTTCAGGGGCACTGACACTCGCTATGGTTTTACTGGAAATCTCTATAAGGCTCTCACCGACAAAGGAATCAACACCTTCATTGATGACAATAATCTTCAAAGAGGAGATGAAATCACACCATCACTCATAAAGGCCATTCAAGAGTCTAGGATTTTCATTCCTGTGTTTTCTATAGATTATGCCTCTTCATCATTTTGTTTGGATGAACTTGTCCAAATCATTCATTGCTTCAAGTCAAAGGGTCGTCTAGTTTTGCCTGTTTTCTATGGGGTGGAACCTACTCAGGTGCGCCATTGGAGTGGAAGTTATGGCGAAGCATTGGCCAAGCATGAAGAGAGGTTCCAAAATAACAAGCAAAACATGGAGCGGTTGCACCAATGGAAGATAGCTCTTAACCAAGCTGCTAACTTCTCCGGCTACCACTTTAGTTCAGGATATGAATTCAAGTTTATCACGGAAATAGTCGAATACATCTCTACCAAGATCAATCGCGTTCCTTTACACATTGCTGATTACCCTGTTGGATTACAGTCCCGAGTACAACATGTCAAATCGCTACTTGATAAGGGATCTGATGAAGGGGTCTACATGGTAGGACTCTATGGTACCGGAGGCTTGGGCAAATCCACACTTGCAAAAGCAATATATAATCTTATTGCTGATCAATTTGAAGGTTTGTGTTTCCTTCATAATGTGAGAGAGAACTCAACTAAAAATAACTTGAAACATCTCCAGGAGGAGCTCCTTTTGAAAACAATTGGCTTGGAAGTTAAGTTAGGAGATGTTAGTGAGGGAGTTCCAATCATAAAGGAAAGGTTGTGTGGAAAGAAGATTCTTTTGATTCTCGATGATGTTGACAATATCAAACAACTGCAAGTTTTGGCTGGAGGACTTGATTGGTTTGGTCGTGGAACTCGAGTCATTGTTACCACTCGAGATAAGTACTTATTAACTAGTCACAAGATAGAAAGCGTGTACGAAATGGAAGGGCTATATGGGATAGAAGCTCTTGAATTGTTGAGGTGGATGGCTTTTAAAAATAGCCAAGTTCCTTCAAGTTATGAAGAAATTTTAATCCGTGCAGTTACATATACTTCGGGACATCCCTTAGCCATAGAAATAATCGGCTCCAATTTATTTCGAAAGAGCATAGAAGAATGGAAGAATACATTAGAGGGGTATGAAAAGATTCCCAATAAAGAGATCCAAAAGATACTTCGAATAAGCTATGATGCTTTGGAGGAAGAGGAACAAAGTGTTTTTCTAGACATTGCTTGTTGTTTCAAAGGGAATAGATGGGTGGAGGTCGATGTTAGGAGTAAATTAATGGTAAATTCATGTGTTAATATAAGTGATTTCTTCTCTAAACCAATGCAAAAATGTGATGAATCCATAGGTTTTTATTAA 1470 0.3898 MARQSPTSSFSYEFTYQVFLSFRGTDTRYGFTGNLYKALTDKGINTFIDDNNLQRGDEITPSLIKAIQESRIFIPVFSIDYASSSFCLDELVQIIHCFKSKGRLVLPVFYGVEPTQVRHWSGSYGEALAKHEERFQNNKQNMERLHQWKIALNQAANFSGYHFSSGYEFKFITEIVEYISTKINRVPLHIADYPVGLQSRVQHVKSLLDKGSDEGVYMVGLYGTGGLGKSTLAKAIYNLIADQFEGLCFLHNVRENSTKNNLKHLQEELLLKTIGLEVKLGDVSEGVPIIKERLCGKKILLILDDVDNIKQLQVLAGGLDWFGRGTRVIVTTRDKYLLTSHKIESVYEMEGLYGIEALELLRWMAFKNSQVPSSYEEILIRAVTYTSGHPLAIEIIGSNLFRKSIEEWKNTLEGYEKIPNKEIQKILRISYDALEEEEQSVFLDIACCFKGNRWVEVDVRSKLMVNSCVNISDFFSKPMQKCDESIGFY 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00480 489 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 468 IPR044974 GO:0006952
Vivi4g00480 489 PRINTS Disease resistance protein signature 386 400 - -
Vivi4g00480 489 PRINTS Disease resistance protein signature 218 233 - -
Vivi4g00480 489 PRINTS Disease resistance protein signature 293 307 - -
Vivi4g00480 489 SMART till_3 15 158 IPR000157 GO:0007165
Vivi4g00480 489 Pfam TIR domain 16 185 IPR000157 GO:0007165
Vivi4g00480 489 Pfam NB-ARC domain 199 434 IPR002182 GO:0043531
Vivi4g00480 489 Gene3D - 181 346 IPR027417 -
Vivi4g00480 489 Gene3D - 352 435 IPR042197 -
Vivi4g00480 489 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 161 IPR035897 -
Vivi4g00480 489 Gene3D - 13 180 IPR035897 -
Vivi4g00480 489 ProSiteProfiles TIR domain profile. 14 183 IPR000157 GO:0007165
Vivi4g00480 489 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 445 IPR027417 -
Vivi4g00480 489 FunFam Disease resistance protein (TIR-NBS-LRR class) 12 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00480 Vivi-Chr4 11136571 11139007 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00480 195 451 WRKY Transcription Factor Family AT5G45050 29.389 1.08e-35 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00480 - - vvo:131594482 983.015