Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00468 ATGGATGGAGATAATGGCCTTCACATAACCAATTGGGGCTACTATGAACCCGTTGCGTCTTTTAAGAGCCATCTCGGGTTACAACTAATGCCGTCGATGCCGGAAAAGCCGCCTCTGCTTGGAGGACGCAATGCTGCGGTTTTGTCGGGTTCTAATGGTGCGTTTCATCATAGGGACATTGGGTTGCCTCAAACTACATACCCTATGGATTATATGAGGGATGCATGGTTTAGTAGTCAGAGAGATAATAAGTATATGAACATGAATATGATACCTACTAACCCTCCGACGAGTTATAGTAGTATGCCCGAGACATCTTCGGCTCAACATATTCAAATGATTCGGCCACATGAATTGGTTAAGGAAGAGACGCCGATGGAGGAGGTACCTGTGGTTGAGAAGTCGAATGGAACTGGTAAGAAGAGGCAGGGTTCGAAGGTGCCTAAATCTCCCAAGGCGAAGAAACCGAAGAGAGGACCCCGTGTACCAAAGGACGAGAATACTCCTTCGGTTCAACGAACACCTAGGGCTCCCAAAAAAACCACGGAAATTGCAATTAATGGTATTGATTTGGATATTTCAAGTATTCCGATTCCTGTTTGTTCATGCACCGGAGCACCTCAACAGTGTTATAGATGGGGCTCAGGTGGGTGGCAATCTGCGTGTTGCACAACAGCGATATCGATATATCCTTTGCCTATGAGTACTAAACGGCGCGGTGCTAGAATAGCGGGAAGGAAAATGAGTATAGGAGCATTTAAGAAAGTTTTAGAGAAACTTGCGGCCGAGGGTTATAACTTTTCTAATCCAATTGATTTGAGGACTTACTGGGCAAAACATGGCACCAACAAGTTTGTTACAATCAGGTAG 870 0.4529 MDGDNGLHITNWGYYEPVASFKSHLGLQLMPSMPEKPPLLGGRNAAVLSGSNGAFHHRDIGLPQTTYPMDYMRDAWFSSQRDNKYMNMNMIPTNPPTSYSSMPETSSAQHIQMIRPHELVKEETPMEEVPVVEKSNGTGKKRQGSKVPKSPKAKKPKRGPRVPKDENTPSVQRTPRAPKKTTEIAINGIDLDISSIPIPVCSCTGAPQQCYRWGSGGWQSACCTTAISIYPLPMSTKRRGARIAGRKMSIGAFKKVLEKLAAEGYNFSNPIDLRTYWAKHGTNKFVTIR 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00468 289 Pfam GAGA binding protein-like family 1 289 IPR010409 -
Vivi4g00468 289 PANTHER - 1 289 IPR010409 -
Vivi4g00468 289 SMART GAGA_bind_2 1 289 IPR010409 -
Vivi4g00468 289 MobiDBLite consensus disorder prediction 119 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00468 Vivi-Chr4 10543064 10544893 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00468 1 289 BBR or BPC Transcription factor family AT2G01930 50.498 3.71e-94 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Vivi4g00468 GAGA_bind 1.5e-104 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00468 - - mtr:120575876 535.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g00468 4 10543064 10544893 Vivi4g00468 4 10543064 10544893 ECH