Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00466 ATGGAAGGAGGAGGAATGTTATCATCATCATCATCATCACCACATTCTCAAAACTATATCTACAGAGAGTGTTTAAGAAACCATGCAGCCAGCCTCGGCAGCTACGCTACCGACGGCTGCGGCGAATTCACCGTGGACGACACTTCAGTATCAGCAGTCAACAGCCTCCAATGTGCAGCCTGTGGCTGCCACCGGAACTTCCATCGCAAGATAACTGCGACGATGGTGAGAGATAATGTGAACGCCATCGTCGCAATGTCAGATCAGGTGATGGAATATTCCGGTGGTGGTGGTGGAGGAGATGGGAGGAGGAAGAGGTATAGGTCGAAGTTTACGGCGGATCAGAAGGAGAAGATGCTGGGGTTTGCGGAGAAGCTGGGGTGGAAGTTGCAGAGGAAGGAACTTGATGAGGAAATTGAAAGGTTTTGTGAAAGTGTTGGGGTGAGTAGACAGGTTTTTAAGGTTTGGATGCATAATCATAAGAATTCTTGTTTCTCTAATTCTTCTGATCCTTCTGCTGGTAATGCTAATTCTTCTCTTACTCAGTAG 549 0.4736 MEGGGMLSSSSSSPHSQNYIYRECLRNHAASLGSYATDGCGEFTVDDTSVSAVNSLQCAACGCHRNFHRKITATMVRDNVNAIVAMSDQVMEYSGGGGGGDGRRKRYRSKFTADQKEKMLGFAEKLGWKLQRKELDEEIERFCESVGVSRQVFKVWMHNHKNSCFSNSSDPSAGNANSSLTQ 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00466 182 Pfam ZF-HD protein dimerisation region 19 71 IPR006456 -
Vivi4g00466 182 SUPERFAMILY Homeodomain-like 93 162 IPR009057 -
Vivi4g00466 182 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 13 162 - -
Vivi4g00466 182 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 21 71 IPR006456 -
Vivi4g00466 182 Gene3D - 91 168 - -
Vivi4g00466 182 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 21 70 IPR006456 -
Vivi4g00466 182 FunFam Zinc-finger homeodomain protein 2 97 166 - -
Vivi4g00466 182 NCBIfam homeobox domain, ZF-HD class 104 162 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00466 Vivi-Chr4 10413363 10414125 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00466 19 163 ZF-HD Transcription Factor Family AT5G65410 40.556 5.07e-41 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vivi4g00466 ZF-HD_dimer 5.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00466 - - vvo:131598807 346.28