Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00448 ATGTCACAGAATCAGATTCCTGACCTTTCTCTACAGATTAGTCTCCCAAACAGTGCTCTTTCATCAATTTGCACAACAACAAATGAAGTTGATGATTTGGATTCACCTTTTGATATATGGAAAAATGTTCATGAAGGTTTCAAATCTCATAGTGATGATTTTTCATCTTCATTCAAGAAAAATGGTGATACTTTTCAAAGAATTGATGATACAGAACTTTCATTAACAACAGCAGCAGCTCCTTCTGAAGCTGAGAGTCTTTGGAAGAGAAAAAGCTTTGTTAGATTAAGACCCTTTCATGGAATCCCTTACAATCCTACAATATTAGAGAAAGATTCAAATTTTTCTCTTTATCCTTCTTGTTCTTCTGGTAATAGTGGTTTTGATGGCGTTAAGCAAGTTTCGAGGTTTAATGGGATAACTATGGAGAGTTTAAGGGCTCACAAGTTTCAATACTTGAATTTGAATCAACATCAAATTCTACAACAGCAACAACAGCAGCAGCAACAGCAACAGCAGAAATATAATCAGTTTGGAAATTCGGAGTTTGGAAATGGATTTGTAAGGTCAAGAATGATGATGCCAAGACAACAGAGTAATAAGAGGAACACAAGGGCTCCGAGGATGCGGTGGACTAGTTCGCTTCATAATCGATTCGTTCACGCCGTTGAGCTTCTCGGCGGCCATGAAAGAGCAACACCAAAGTCAGTTTTGGAGCTAATGGATGTGAAAGATTTAACACTAGCTCATGTGAAGAGCCATTTACAGATGTATAGAACTGTTAAAAACACTGACAAGCCAGCAGCTTCTTCAGATGGAGATGAGAATTTCATGTCCCTAACACCACCTCATAATCAAAATAATCTCTCTCTAGATCATGATATTAGCTTCATTTCCAACAATCTATGGGGAAATTCATCTTCAAGTAAAGGAACATGGACACAAGGTAGTTCCAGAGACTTTGATGAGCATAGTACAGATGAAATCCTATCATCTCATCACATTGGGAACCCTCCTCAGGGAAACAACTATATACAACCAAGAGGCTTCAAGGATCAAAACTTAGACTGTCAAAAGAATCCAAACTTGGAGTTCACCTTAGGGAGATCAAATTAA 1116 0.3781 MSQNQIPDLSLQISLPNSALSSICTTTNEVDDLDSPFDIWKNVHEGFKSHSDDFSSSFKKNGDTFQRIDDTELSLTTAAAPSEAESLWKRKSFVRLRPFHGIPYNPTILEKDSNFSLYPSCSSGNSGFDGVKQVSRFNGITMESLRAHKFQYLNLNQHQILQQQQQQQQQQQQKYNQFGNSEFGNGFVRSRMMMPRQQSNKRNTRAPRMRWTSSLHNRFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKNTDKPAASSDGDENFMSLTPPHNQNNLSLDHDISFISNNLWGNSSSSKGTWTQGSSRDFDEHSTDEILSSHHIGNPPQGNNYIQPRGFKDQNLDCQKNPNLEFTLGRSN 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00448 371 MobiDBLite consensus disorder prediction 331 356 - -
Vivi4g00448 371 SUPERFAMILY Homeodomain-like 205 261 IPR009057 -
Vivi4g00448 371 Pfam Myb-like DNA-binding domain 208 259 IPR001005 -
Vivi4g00448 371 NCBIfam myb-like DNA-binding domain, SHAQKYF class 207 260 IPR006447 GO:0003677
Vivi4g00448 371 MobiDBLite consensus disorder prediction 330 356 - -
Vivi4g00448 371 Gene3D - 206 263 - -
Vivi4g00448 371 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 7 370 IPR044847 GO:0000976|GO:0006355|GO:0010158
Vivi4g00448 371 FunFam Myb family transcription factor 205 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00448 Vivi-Chr4 10187762 10197530 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00448 66 369 G2-like Transcription Factor Family AT5G16560 38.720 2.55e-45 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vivi4g00448 Myb_DNA-binding 1e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00448 - - cam:101493712 437.573