Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00446 CTATCTCCCCTCTTGACGAAGAGGAACAACTCTTTCTTGGTTAAGGAGTTCGGTAACAACACTCAGAGTGTTCAGTTTAGCAGAGAGCCAAACAGTCTCTACAACCTCAACTCCTACAAGTACTCTGGTTTGGCCAACAAGAAAACTGTTACTATTCAGCCAGCTGGCAAAGATCAGTCTGTGTTATTGGCGACCACCAAGCCAAGGAAGCAGAACAAACCTTCCACTTTGCTTCACAAATCTGTGATGAAGAAGGAATTCAGGAGGATGGCAAAGGCTGTCCAAAATCAGGCAAAATAA 300 0.4433 LSPLLTKRNNSFLVKEFGNNTQSVQFSREPNSLYNLNSYKYSGLANKKTVTIQPAGKDQSVLLATTKPRKQNKPSTLLHKSVMKKEFRRMAKAVQNQAK 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00446 99 Gene3D - 3 99 - -
Vivi4g00446 99 PANTHER 60S RIBOSOMAL PROTEIN L28 5 98 IPR002672 GO:0003735|GO:0005840|GO:0006412
Vivi4g00446 99 Pfam Ribosomal L28e protein family 5 98 IPR029004 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00446 Vivi-Chr4 10157620 10160868 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00446 5 97 Cytoplasmic Ribosomal Protein Gene Family AT4G29410 64.516 1.79e-39 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00446 K02903 - gmx:100499963 164.081