Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00431 ATGGTGTTAGGATGGGGAAGAAGGAAGAACAACAAAAAGAACAAAGGTGGAAAACCAAACATGGAAGTGGTGATACCAAATCAATATAAGTGTCCAATAACTCTAGATTTGATGAAGGATCCGGTTACATTATCAACCGGAATCACTTATGATAGAGAGAGTGTTGAAAGATGGTTTGATGAAGGAAACATCACATGTCCACTTACAAACCAAGTAGTGAGAAATTTTGACATGATTCCAAATCATTCTCTTAGGATAATGATTCAAGATTGGTGTGTTGAGAATAGACAAAATGGTGTGGAGAGGATTCCGACTCCGAGGATACCGATTAGCCCGACCGATGTTTCGGAGCTTGTTTTTCGGGTTAAGGAATGTGCAAGAGGTTTGGATCAATATGGTTGTGTTGAGTTGGTTCAAAAGATGGAGAGATGGAGTAATGAAAGTGAGAGGAATAAGAGATGTATAGTTGAGAATGGAGCAATAAGTGGTTTGGCTTTAGCTTTTGAGGCTTTTGCTAATGATTCTATTGAGAGGAATTTGATTGTTTTAGAAGTGATTTTGTCATCACTTAATTGGATGTTTCCACTTCAACTAGAAGCTCAAGAGTCTCTAGGTTCAAAAGCTTCTTTGCATTGCATGGTTTGGTTTTTGAAGCATCAAGATGTTAAGGGAAAAGAAAAAGCTATAATTGCATTGAAAGAGATTCTTTCTTTTGGTGATGAGAAGCATGTGGAAGCACTTTTGGAGATTGGAGGAGTTAATGAGCTTTTGATTGAGTTCATTAACAAGAGAATTAGTCCTATAATCACAAAAGCTTCATTGAGGATTGTTTGGTATTTGGTTTCATCCAATTCTAGCTTCAATGAAAAGCTAAAATTTTCATTAGTTGAATTGGGTTTGGTTTCTTCAATTTTGAACATTCTTATTGACTCAGAAAAAAGTGTTTGTGAAAAAGCTTTTACTATTTTGGATTCTTTATTAAGCTGTGATTTTGGAAGGGAAAAAGCTTTTGAGAATGACTTAACAATTCCTTTGTTGGTAAAGAAAATATTGAGGGTTTCACCATTGACTACAGAGTTTTCTGTTTCTTGTATTTGGAAGCTATGCAAATATGAAGAGAAAAGCTATGAAGGAAAAGCTTTGATAGAAGCACTTCAAGTAGGTGCTTTTCAGAAGCTATTATTGGTGTTACAAGTTGGTTGTAGTGATGAGACAAAAGAAAAAGCAACTGATCTTCTCAAATTGATGAATCCTTATAGGGCTGAGTTAGAAGAATGCATTGATTCAGATTTCAAGAATCTTAAGAGATCATATTAA 1317 0.3516 MVLGWGRRKNNKKNKGGKPNMEVVIPNQYKCPITLDLMKDPVTLSTGITYDRESVERWFDEGNITCPLTNQVVRNFDMIPNHSLRIMIQDWCVENRQNGVERIPTPRIPISPTDVSELVFRVKECARGLDQYGCVELVQKMERWSNESERNKRCIVENGAISGLALAFEAFANDSIERNLIVLEVILSSLNWMFPLQLEAQESLGSKASLHCMVWFLKHQDVKGKEKAIIALKEILSFGDEKHVEALLEIGGVNELLIEFINKRISPIITKASLRIVWYLVSSNSSFNEKLKFSLVELGLVSSILNILIDSEKSVCEKAFTILDSLLSCDFGREKAFENDLTIPLLVKKILRVSPLTTEFSVSCIWKLCKYEEKSYEGKALIEALQVGAFQKLLLVLQVGCSDETKEKATDLLKLMNPYRAELEECIDSDFKNLKRSY 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00431 438 Pfam U-box domain 25 96 IPR003613 GO:0004842|GO:0016567
Vivi4g00431 438 CDD RING-Ubox_PUB 26 78 IPR045210 -
Vivi4g00431 438 Gene3D - 132 431 IPR011989 -
Vivi4g00431 438 MobiDBLite consensus disorder prediction 1 20 - -
Vivi4g00431 438 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 103 IPR013083 -
Vivi4g00431 438 SUPERFAMILY ARM repeat 213 416 IPR016024 -
Vivi4g00431 438 PANTHER WDSAM1 PROTEIN 22 417 IPR045185 GO:0061630
Vivi4g00431 438 FunFam RING-type E3 ubiquitin transferase 25 96 - -
Vivi4g00431 438 SMART Ubox_2 28 91 IPR003613 GO:0004842|GO:0016567
Vivi4g00431 438 ProSiteProfiles U-box domain profile. 24 98 IPR003613 GO:0004842|GO:0016567
Vivi4g00431 438 SUPERFAMILY RING/U-box 22 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00431 Vivi-Chr4 9475992 9477747 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00431 5 438 U-box Gene Family AT5G37490 41.855 3.34e-109 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00431 - - gmx:100794340 656.366