Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00428 ATGGCGCTCGTCCGCCGCCGCCATCCCAATCTCCGTCTTCCAGAAATCTCCGACCACCGTCCTCGTTTCCCTGTCCCCCTTCCTCCCAACATCTACAAACAATCATCCTCCACCGGCTCTGACACCCTTGCTCCCGGTGACTTCGAGAAACTCGCCGTCCTCGGTCACGGCAACGGCGGCACCGTTTACAAAGTCCGCCACAAAGTCACTTCCACCATCTACGCTCTAAAAGTCAGCCACAACGACTCCGACCCCACCACGCGCCGCCGCACACTAGCAGAAATCAACATCCTCCGCCGCGCCACCGATTGTCCCAACATCGTTAAATTCCACGGCTCCTTCGAGAAACCCACCGGCGACATCGCGATTCTCATGGAGCTCATGGACTCCGGCAGCCTGGAAACCGCTCTCAAAACAAACGGAACATTCTCGGAACCAAAACTCGCCTCAGTGGCGCGTGAAGTTCTCAACGGGTTATCGTATCTCCACGCGCGTAACATCGCGCACCGTGACATTAAACCTTCGAACATCCTCGTTAACAACAAAAACGAGGTTAAGATTGCAGATTTTGGTGTTGGTAAGATAATGGGTCGCACGCTTGAAGCATGCAACTCTTACGTTGGCACGTGTGCTTATATGAGTCCGGAGCGGTTTGACCCGGAAGTTTATGGCGGGAACTATAACGGTTTTTCAGCTGATATATGGAGTTTGGGTTTAACACTATTTGAACTTTATGTGGGTCATTTCCCGTTTCTTCAATCGGGTCAACGACCCGATTGGGCTATGCTGATGTGCGCGATTTGCTTCTCCGATCCACCGAGTTTGCCTGATTCCGCTTCACCGGAGTTTCGAGACTTTGTTGAGTGTTGTCTTAAAAAGGAATCCGGTGAGCGGTGGACGGCGGCTCAGTTATTGACCCACCCGTTTTTGTGTAAAGATATGGATAGTTGTTAA 954 0.521 MALVRRRHPNLRLPEISDHRPRFPVPLPPNIYKQSSSTGSDTLAPGDFEKLAVLGHGNGGTVYKVRHKVTSTIYALKVSHNDSDPTTRRRTLAEINILRRATDCPNIVKFHGSFEKPTGDIAILMELMDSGSLETALKTNGTFSEPKLASVAREVLNGLSYLHARNIAHRDIKPSNILVNNKNEVKIADFGVGKIMGRTLEACNSYVGTCAYMSPERFDPEVYGGNYNGFSADIWSLGLTLFELYVGHFPFLQSGQRPDWAMLMCAICFSDPPSLPDSASPEFRDFVECCLKKESGERWTAAQLLTHPFLCKDMDSC 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00428 317 SMART serkin_6 48 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00428 317 ProSitePatterns Protein kinases ATP-binding region signature. 54 77 IPR017441 GO:0005524
Vivi4g00428 317 Gene3D Transferase(Phosphotransferase) domain 1 131 316 - -
Vivi4g00428 317 Gene3D Phosphorylase Kinase; domain 1 30 129 - -
Vivi4g00428 317 FunFam Mitogen-activated protein kinase 2 130 316 - -
Vivi4g00428 317 FunFam Dual specificity mitogen-activated protein kinase kinase 33 128 - -
Vivi4g00428 317 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 36 312 - -
Vivi4g00428 317 CDD PKc_MAPKK_plant_like 47 310 - -
Vivi4g00428 317 Pfam Protein kinase domain 48 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00428 317 SUPERFAMILY Protein kinase-like (PK-like) 44 312 IPR011009 -
Vivi4g00428 317 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Vivi4g00428 317 MobiDBLite consensus disorder prediction 1 25 - -
Vivi4g00428 317 ProSiteProfiles Protein kinase domain profile. 48 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00428 Vivi-Chr4 9433463 9434575 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00428 1 314 MAP Kinase Kinase Gene Family AT1G73500 58.176 9.93e-122 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Vivi4g00428 Pkinase 1.8e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00428 K20604 - gmx:100804100 516.538