Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00425 ATGAGCTTGCAAATGAGACGAGAAAGAAGGGAAGGGTCGAGGTTCCCTTTGCAACGTCCTCCTCGACAGTTATGGGTTCCGAAAGGATCGGGAGGTTCAGCCTCAACCACTGCTGAAAATACTGCGGAAACCACTGCCACAACCACTGCCTCAACCACTCCCACTGCAAGTGTTGCCCACCCTACAGGTTTGCAGTCTCGTGAGAAGAACACTAATGGTGATGGTGGTTCGTCTAATCAAGGGGCTGTTGTTGCTCCACCATTGGCTAGGCATAGAAGTAATCATCATGTTGAAAGGGGACATGTTTCTCATCATGTTGAAAGGGGACATGTTGCGCGTCGTGAGGAAAGGGAACATGTTGGTCATCGAGTGGAAAGGGGACATGTTGGTCATCGTGTGGAAAGGGGACATGTTCCACATAGGGTTGAAAGGGGAAGTGATAGAGGGAGGAGTGGAAATATGGTGGGGAGGGAATACGGAACGAGGGACTCTAGTTTGCCTCAGTTGGTGCAGGAGATTCAGGAGAAGCTCACGAGAGGTACCGTGGAGTGTATGATTTGCTATGATATGGTTCGTAGGTCTGCACCTGTTTGGTCTTGCTCCAGCTGCTACTCTATCTTTCACCTGAACTGTATCAAGAAGTGGGCTCGTGCGCCCACCTCGGTTGATTTATCAGCGGAGAAGAATCTAGGGTTTAATTGGCGGTGTCCTGGTTGTCAGTTTGTGCAACATACGTCTTCAAGGGATATAAAATATGTATGTTTTTGCGGAAAGAGGGTAGACCCTCCGTCTGATTTGTATTTGACCCCTCATTCGTGTGGTGAACCGTGTGGAAAGCCTCTTGAGAAGGAGGTGTTTGGTACTGAAGGGAGAAAAGATGAGCTTTGTCCTCATGCTTGTGTCTTGCAATGCCATCCGGGTCCATGTCCTCCGTGTAAAGCATTTGCCCCTCCTCGTTTGTGCCCTTGTGGGAAGAAAAGAATCGCCACTCGTTGCTCTGATAGGCAGTCTGATCTTACTTGCGGTCAGCGTTGTGATAAGCTTGTTGATTGTGGACGTCATCGCTGTGAAAATGCTTGCCATGTGGGTCCTTGTGATCCTTGTCAGGTGCTCATCAATGCATCTTGTTTTTGCAGTAAGATGGAGCAGGTTATTTTTTGTGGGGAGATGGCTATGAAAGGTGAATTTAAACCAGAAGGTGGAGTTTTTTCGTGTGGTTCTAATTGTGGAAAGGAACTTAGTTGTGGTAATCATATCTGCCATGATGCTTGTCATCCAGGCAGCTGCGGTGAATGTGAATTCTTACCAAGCCGGGTTAAGACATGCTGTTGTGGAAAAACAAAGCTGGATGTAGAACGGAAGAGTTGTGTGGATCCAATACCTACCTGCTCACAAGTATGTGGCAAGCGCCTTTGTTGTGGGATACATGATTGTCCGGAGCCATGTCATGTTGGGGACTGTCCGCCGTGTAAGGTCAAGATTTCACAGAAATGCCGCTGTGGCTCAACTTCCCGAACTGTGGAATGCTATAAAACAATATCAGAGAATCAGAAATTTACTTGTGAAAAGCCGTGTGGGGCAAAGAAAAATTGTGGAAGGCACCGATGCAGCGAAAAGTGTTGTCCAATGTCTGGTCCAAACATTGATTTGACTAATGCGGATTGGGATCCTCACTTCTGTTCCATGCTGTGTGGAAAGAAGCTGAGATGTGGCCAGCATGTGTGCGAGACATTGTGTCATAGTGGTCACTGTCCACCATGTCTTGAAACAATCTTCACTGATTTAACATGCGCTTGTGGTAGGACCTCAATCCCTCCTCCCCTACCTTGTGGTACAATGCCTCCCTTATGTCAACTTCCATGTTCGGTTCCTCAGCCGTGTGGTCATTCGGGCTCTCATAGTTGCCATTTTGGAGATTGCCCTCCATGTTCGGTGCCCGTTTCAAAAGAATGTGTTGGTGGCCATGTCATTCTTCGGAACATACCTTGCGGCTCAAATAATATTAGATGCAATAATCCCTGTGGAAGGACTAGACAGTGTGGTTTACATGCATGTGGTAGAACATGTCATTCACCACCTTGTGATGTTCTACCTGGTTTTGTGGAAGGTTACCGAGCGCCATGTGGACAGACATGTGGTGCTCCGAGGAGTGGCTGCCGGCATATGTGTATGGCTCAATGTCACCCTACATTTTCTTGCCCGGATGTAAGATGCGAGTTCCCTGTTACGATTACTTGTTCTTGTGGTCGAATAACAGCAAATGTTCCTTGTGATGTTGGTGGTAGCAATAGTAATTATAATGCTGATGCAGTTTATGAGGCTTCAATTATTCAAAAATTGCCTGTGCCGCTTCAACCGGTTGATGCAAATGGCCAAAAAGTTCCCCTTGGACAAAGAAAGCTGATGTGTGATGAAGAATGTGCTAAGTTGGAGCGTAAAAGGGTTCTTGCCGATGCATTCGACATCACTCCAAGTCTTGATGCTCTCCATTTTGGTGAGAATTCTTCTTTTGAATTGCTTTCCGACACGTTTAGACGTGATCCAAAGTGGGTTTTGGCTGTTGAAGAAAGATGCAAAATATTAGTACTTGGGAAAAGCAAAGGAACAACACATGGTTTAAAAGTCCATGTCTTTTGTCCTATGATAAAGGATAAAAGAGATGCCGTGAGATTGATTGCTGAAAGATGGAAGCTTGCGGTGAACGCAGCTGGTTGGGAGCCAAAGCGGTTTATCGTAATTTCCGCTACCCAAAAATCCAAGGCCCCAGCTCGTGTGCTCGGAGTTAAGGGTACCACAACTTTAAATGCACCTCTTCCTACTGCATTTGATCCGTTGGTTGATATGGACCCGAGGCTTGTCGTCTCGTTTCCAGACTTGCCAAGGGATGCTGATATTAGTGCCTTGGTACTTCGGTTCGGTGGCGAATGTGAGCTTGTTTGGTTGAATGATAAGAATGCTTTAGCTGTTTTTCATGATCCTGCCCGAGCTGCAACTGCGATGAGGAGGTTGGATCATGGAACAGTTTATCAAGGTGCTGTTTCATTTGTCCAGAATGTCGGAGCATCGGCGGCGTCTTCGGTTACCAATGCTTGGGGAGGAACAAAAGAGGGAGGAGGGTTGTCAACACTGAGAAGCAATCCATGGAAGAAGGCGGTGGTTCTTGACCCAGGATGGAAAGAAGAATCATGGGGCGAAGATCAATGGGGTACCGGTGGTTCTGCGAATATCCAACCATCTGTTTTGAAGAAAGAAGCGCCAATACCCGCTTCGACAAATCCTTGGAATGTTTTAAACCAGGAATCAAGTTCAAGCTCATCGTTTACAACTGTCATGAGAAGTGAAGCTTTTGGTAAACAAACCCAAAACGGCGATGTCTCAACTAGAGTGCAGCCTTCTACCGGCGGAGCAATTGGAGGAAACAAGGATGCAACAGAAGCTGCTGAAGTTGTAGATGATTGGGAGCAGGCCTTTGAGTAA 3477 0.4685 MSLQMRRERREGSRFPLQRPPRQLWVPKGSGGSASTTAENTAETTATTTASTTPTASVAHPTGLQSREKNTNGDGGSSNQGAVVAPPLARHRSNHHVERGHVSHHVERGHVARREEREHVGHRVERGHVGHRVERGHVPHRVERGSDRGRSGNMVGREYGTRDSSLPQLVQEIQEKLTRGTVECMICYDMVRRSAPVWSCSSCYSIFHLNCIKKWARAPTSVDLSAEKNLGFNWRCPGCQFVQHTSSRDIKYVCFCGKRVDPPSDLYLTPHSCGEPCGKPLEKEVFGTEGRKDELCPHACVLQCHPGPCPPCKAFAPPRLCPCGKKRIATRCSDRQSDLTCGQRCDKLVDCGRHRCENACHVGPCDPCQVLINASCFCSKMEQVIFCGEMAMKGEFKPEGGVFSCGSNCGKELSCGNHICHDACHPGSCGECEFLPSRVKTCCCGKTKLDVERKSCVDPIPTCSQVCGKRLCCGIHDCPEPCHVGDCPPCKVKISQKCRCGSTSRTVECYKTISENQKFTCEKPCGAKKNCGRHRCSEKCCPMSGPNIDLTNADWDPHFCSMLCGKKLRCGQHVCETLCHSGHCPPCLETIFTDLTCACGRTSIPPPLPCGTMPPLCQLPCSVPQPCGHSGSHSCHFGDCPPCSVPVSKECVGGHVILRNIPCGSNNIRCNNPCGRTRQCGLHACGRTCHSPPCDVLPGFVEGYRAPCGQTCGAPRSGCRHMCMAQCHPTFSCPDVRCEFPVTITCSCGRITANVPCDVGGSNSNYNADAVYEASIIQKLPVPLQPVDANGQKVPLGQRKLMCDEECAKLERKRVLADAFDITPSLDALHFGENSSFELLSDTFRRDPKWVLAVEERCKILVLGKSKGTTHGLKVHVFCPMIKDKRDAVRLIAERWKLAVNAAGWEPKRFIVISATQKSKAPARVLGVKGTTTLNAPLPTAFDPLVDMDPRLVVSFPDLPRDADISALVLRFGGECELVWLNDKNALAVFHDPARAATAMRRLDHGTVYQGAVSFVQNVGASAASSVTNAWGGTKEGGGLSTLRSNPWKKAVVLDPGWKEESWGEDQWGTGGSANIQPSVLKKEAPIPASTNPWNVLNQESSSSSSFTTVMRSEAFGKQTQNGDVSTRVQPSTGGAIGGNKDATEAAEVVDDWEQAFE 1158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00425 1158 CDD NF-X1-zinc-finger 405 451 - -
Vivi4g00425 1158 MobiDBLite consensus disorder prediction 142 161 - -
Vivi4g00425 1158 CDD NF-X1-zinc-finger 273 334 - -
Vivi4g00425 1158 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 55 1065 IPR034078 GO:0003700
Vivi4g00425 1158 SUPERFAMILY RING/U-box 174 244 - -
Vivi4g00425 1158 CDD NF-X1-zinc-finger 560 612 - -
Vivi4g00425 1158 CDD NF-X1-zinc-finger 617 665 - -
Vivi4g00425 1158 MobiDBLite consensus disorder prediction 29 79 - -
Vivi4g00425 1158 ProSiteProfiles Zinc finger RING-type profile. 184 240 IPR001841 -
Vivi4g00425 1158 MobiDBLite consensus disorder prediction 1 83 - -
Vivi4g00425 1158 ProSiteProfiles Zinc finger PHD-type profile. 181 242 IPR019787 -
Vivi4g00425 1158 CDD NF-X1-zinc-finger 463 511 - -
Vivi4g00425 1158 Pfam NF-X1 type zinc finger 351 369 IPR000967 GO:0005634|GO:0008270
Vivi4g00425 1158 Pfam NF-X1 type zinc finger 531 542 IPR000967 GO:0005634|GO:0008270
Vivi4g00425 1158 Pfam NF-X1 type zinc finger 415 432 IPR000967 GO:0005634|GO:0008270
Vivi4g00425 1158 Pfam NF-X1 type zinc finger 627 644 IPR000967 GO:0005634|GO:0008270
Vivi4g00425 1158 Pfam NF-X1 type zinc finger 298 313 IPR000967 GO:0005634|GO:0008270
Vivi4g00425 1158 Pfam NF-X1 type zinc finger 570 587 IPR000967 GO:0005634|GO:0008270
Vivi4g00425 1158 Pfam NF-X1 type zinc finger 473 491 IPR000967 GO:0005634|GO:0008270
Vivi4g00425 1158 Pfam NF-X1 type zinc finger 680 695 IPR000967 GO:0005634|GO:0008270
Vivi4g00425 1158 MobiDBLite consensus disorder prediction 1116 1134 - -
Vivi4g00425 1158 MobiDBLite consensus disorder prediction 1 16 - -
Vivi4g00425 1158 CDD NF-X1-zinc-finger 341 389 - -
Vivi4g00425 1158 SMART znfxneu3 570 589 IPR000967 GO:0005634|GO:0008270
Vivi4g00425 1158 SMART znfxneu3 296 314 IPR000967 GO:0005634|GO:0008270
Vivi4g00425 1158 SMART znfxneu3 351 370 IPR000967 GO:0005634|GO:0008270
Vivi4g00425 1158 SMART znfxneu3 627 645 IPR000967 GO:0005634|GO:0008270
Vivi4g00425 1158 SMART znfxneu3 415 434 IPR000967 GO:0005634|GO:0008270
Vivi4g00425 1158 SMART znfxneu3 719 740 IPR000967 GO:0005634|GO:0008270
Vivi4g00425 1158 SMART znfxneu3 680 710 IPR000967 GO:0005634|GO:0008270
Vivi4g00425 1158 SMART znfxneu3 531 562 IPR000967 GO:0005634|GO:0008270
Vivi4g00425 1158 SMART znfxneu3 473 492 IPR000967 GO:0005634|GO:0008270
Vivi4g00425 1158 CDD RING-CH-C4HC3_NFX1-like 183 240 - -
Vivi4g00425 1158 MobiDBLite consensus disorder prediction 1116 1158 - -
Vivi4g00425 1158 MobiDBLite consensus disorder prediction 100 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00425 Vivi-Chr4 9358466 9362845 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Vivi4g00425 zf-NF-X1 0.057 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00425 K12236 - gmx:100819219 1682.92