Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00416 ATGTATCAAATTTCCTTCTCTTCATTTCAAAACCAAAATCCATTATCAATGCCATTCATCACCCACTCACCACCATCTTCTTCCCCTTTCACCATTGTCACCTCTATGGGATTCACTGCCACTCCTTCAAATCTCACTTTCAAAACCACTACTACTTTCCCTTTCTCTTTCTCCTCCACCAGAAACCGCTCCCGTTTTGCTTTAATTGTCAGAGCCAAAACCGAAACTGATTACTACTCAACTTTGAATGTCAGCAACACCGCTTCGTTGCAAGAAATCAAAAGCTCCTACCGAAAACTTGCTCGAAAGTACCATCCAGATATGAACAAAAGCCCTGGAGCAGAAGAGAAGTTCAAGGAGATTGGTGCTGCGTACGAGGTTCTATCAGATGATGAGAAAAGATCTTTATATGATCGCTTTGGTGAGTCAGGTCTAGAAGGAGAAAATGGAGGACCCGCCAGTGCCTCAGGGGTTGATCCTTCTGATTTATTCGACGCATTCTTTAGTCGTTCGGAAGGACTATTTAGTAATGATAGGGGCTTCGGCTTCAATATAAGAAACGATAGAAACCGCCATGATATTCGGTATGACCTACGTTTGAGCTTTGAAGAATCTATTTTTGGAGGAAAGAGAGAGATAGAAGTTTCTTGTTATGAGACATGTAATAGTTGTGATGGTACAGGAGCTAAATCTACGAATTGCATTAAAAAATGCCTACATTGTGGTGGCAAAGGAGGAGAGAAGAAAACCGAGAGAACGCCGTTTGGAATGATGTCTCAGGTTTCTACATGCTCGAAGTGTGGTGGTCTCGGCATGATAGTCACGGAAAGCTGTCGAAAGTGTGACGGTAATGGTCATGTGCAAGCTAAACGAAAAGTGGAAGTGGTCATTCCTCCCGGTGTCAATGATGGAGACACAATGCGAATTCGAGGAGAAGGAAATTTTGATAAGAAAAGGCATTATACCGGGGATCTTTTTGTTGTTCTCCATGTGGATGAAAAGCGAGGAATTCGGAAAGAGGGTCTCCATTTATACTCAAAGATTAACATTGACTTCACAGAGGCAATACTAGGGTCTGTTAAAAAGGTAGAAACGGTTGAAGGTTTAAGGAATCTCAAAATTCCTTCCGGGATTCAACACGGACATTCAGTGAAACTATCACGTTTGGGAGTTCCAGACATGAATAAACCATCTATTCGGGGCGATCATTACTTCGTTATAAATGTTCTTATTCCAAAAGATATCAGTGACACCGAACGCGCACTTGTTGAGAAATTAGCTTCGTTGAGAGCATCTAGAGGAGGCCGTTCGTTTTCTTCCGATGACCGTTCGTTTTCTTCCGATGACCGTTCGTTTTCTTCCGATGACCGTGGAAAATCTAAAGGAAAATTCGATGAATTCCTGATGAAGAAGGATACAGAAAGTGATGCCTCGGGCAAGGGAACCGAAACTGCAAAGTCTCTTTGGGGATCAATCAAGAACTTCTTAAGGAAAGGAAACTCCGAAGAAAGATTCGCATCAATTAGCCAAGATACATCGACAATGTTGTGGAGATTTGACCACCAAAACTACTTAGTCCCACATACCATTTTTGTTGTTCTATTTATAACATGGATTTTTAAATCTATAGCAAAGTCTAAGAACTTGAAAAGAACCTAA 1659 0.4147 MYQISFSSFQNQNPLSMPFITHSPPSSSPFTIVTSMGFTATPSNLTFKTTTTFPFSFSSTRNRSRFALIVRAKTETDYYSTLNVSNTASLQEIKSSYRKLARKYHPDMNKSPGAEEKFKEIGAAYEVLSDDEKRSLYDRFGESGLEGENGGPASASGVDPSDLFDAFFSRSEGLFSNDRGFGFNIRNDRNRHDIRYDLRLSFEESIFGGKREIEVSCYETCNSCDGTGAKSTNCIKKCLHCGGKGGEKKTERTPFGMMSQVSTCSKCGGLGMIVTESCRKCDGNGHVQAKRKVEVVIPPGVNDGDTMRIRGEGNFDKKRHYTGDLFVVLHVDEKRGIRKEGLHLYSKINIDFTEAILGSVKKVETVEGLRNLKIPSGIQHGHSVKLSRLGVPDMNKPSIRGDHYFVINVLIPKDISDTERALVEKLASLRASRGGRSFSSDDRSFSSDDRSFSSDDRGKSKGKFDEFLMKKDTESDASGKGTETAKSLWGSIKNFLRKGNSEERFASISQDTSTMLWRFDHQNYLVPHTIFVVLFITWIFKSIAKSKNLKRT 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00416 552 SUPERFAMILY HSP40/DnaJ peptide-binding domain 193 331 IPR008971 GO:0006457|GO:0051082
Vivi4g00416 552 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 208 288 IPR036410 -
Vivi4g00416 552 Pfam DnaJ C terminal domain 194 412 IPR002939 -
Vivi4g00416 552 ProSiteProfiles Zinc finger CR-type profile. 208 290 IPR001305 GO:0031072|GO:0051082
Vivi4g00416 552 SMART dnaj_3 76 133 IPR001623 -
Vivi4g00416 552 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 51 433 - -
Vivi4g00416 552 Hamap Chaperone protein DnaJ [dnaJ]. 74 473 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Vivi4g00416 552 Gene3D DnaJ domain 74 178 IPR036869 -
Vivi4g00416 552 Gene3D - 192 327 - -
Vivi4g00416 552 FunFam Chaperone protein dnaJ A6 chloroplastic 74 180 - -
Vivi4g00416 552 ProSiteProfiles dnaJ domain profile. 77 141 IPR001623 -
Vivi4g00416 552 Pfam DnaJ domain 77 138 IPR001623 -
Vivi4g00416 552 CDD DnaJ_C 193 415 - -
Vivi4g00416 552 CDD DnaJ_zf 221 285 IPR001305 GO:0031072|GO:0051082
Vivi4g00416 552 MobiDBLite consensus disorder prediction 434 460 - -
Vivi4g00416 552 Pfam DnaJ central domain 221 285 IPR001305 GO:0031072|GO:0051082
Vivi4g00416 552 PRINTS DnaJ domain signature 97 112 IPR001623 -
Vivi4g00416 552 PRINTS DnaJ domain signature 133 152 IPR001623 -
Vivi4g00416 552 PRINTS DnaJ domain signature 79 97 IPR001623 -
Vivi4g00416 552 PRINTS DnaJ domain signature 113 133 IPR001623 -
Vivi4g00416 552 SUPERFAMILY Chaperone J-domain 73 181 IPR036869 -
Vivi4g00416 552 CDD DnaJ 77 130 IPR001623 -
Vivi4g00416 552 MobiDBLite consensus disorder prediction 442 460 - -
Vivi4g00416 552 SUPERFAMILY HSP40/DnaJ peptide-binding domain 338 423 IPR008971 GO:0006457|GO:0051082
Vivi4g00416 552 Gene3D - 221 285 - -
Vivi4g00416 552 FunFam Molecular chaperone DnaJ 213 290 - -
Vivi4g00416 552 ProSitePatterns Nt-dnaJ domain signature. 118 137 IPR018253 -
Vivi4g00416 552 Gene3D - 337 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00416 Vivi-Chr4 8812580 8818209 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00416 78 138 C2H2 Transcription Factor Family AT1G74250 44.776 5.17e-08 53.9