Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00411 ATGCAAATGCAAATTCAAATGCAAATGCAAATGCAAATGCAAATGAAACTCTTCTTCTTTTTCCTTCTTCTTTCTTTTGTGAAACCTGACTTAACTTCCGAACGCGCCGCCCTCTTAAACCTACGCGCCGCCGTAGGCGGCAGAACCTTCCTCTGGAACACCACCTCCGCAACTCCATGTAACTGGTCCGGCGTCAAATGCGACCAAAACCACACTCACGTTGTCGAGCTTCACCTCCCTGCCGTCTCACTCACCGGAAAACTCCCCGCCGGGGTATTCCCCGACCTCCCTAACCTCCACACACTCAGCCTCCGTTTCAACTCCCTCTCCGGTCCTCTCCCCTCCGACCTCTCCGCTTGCACCTCCCTCCGTAACCTCTACCTCCAGCAGAATACTCTCTCCGGCGAACTCCCGGCGACACTCATCCAACTCACCGGTTTAGTCCGTTTGAATTTAGCTTCTAACAACTTCTCCGGCAAAATTCCGGTTGGGTTTCAAAACCTAACCCGGTTGAAAACGTTGTATCTTCAAAACAACCTGTTCGCCGGTTCTCTTGACGAGTTGAACCGGGTTGAACTCGATCAGTTCAATGTCTCCGACAACATGCTAAACGGTTCAGTTCCTGAAAATTTACAAGCTTTTGGTAAAGATTCGTTTTTGGGTAATAGTCTCTTATGTGGAAAACCCCTAAACCCTTGTCCTAAGGAAGGAGGTGCAAATAGTGAAAATGGGGGTGGAAATAGAAATTCTTCTTCGGTTGATGATAATCAAGGGCTTGTGAAGAACAAGAAGAAAAGCAAATTATCTGGTGGTGCCATAGCTGGAATTGTTATTGGGTCTGTTGTGGTTCTTTTGTTTATAGTTTTTGCTATGATTCTTCTATGCAGGAATAAAAATGGTGAAAAAACTAGTTCAATTGATGAAGTTGCTGCAACTTTGAAGCATAATCAGCATGATGAGGGGATTCATAGTGAGAATGTTGGAAATGGGAATGGGTATTCGTCGGCCGCGGCTCTCGCGGTACCGGCTGTGGTGAATGAAGGCGTTGTTGTGGGTGGTGGTGATAAAAAATTGGTGTTTTTTAGGAATTGGGGTAAGGTGTTTGGTTTGGAGGATTTGTTAAGAGCTTCTGCGGAGGTATTAGGGAAAGGGACTTTTGGGACTTCTTATAAGGCAGTTTTGGAGGTTGGTCCTGTGGTTGTAGCTGTGAAGAGATTAAGGGATGTGACCATTTCTGAGAGGGAGTTTAAGGAGAAGATCGAACGGGTCGGAACGATGGTTCATGAGAATTTGGCACCTCTTAGGGCTTACTATTATAGTAGAGATGAGAAGCTTCTTGTTCATGATTATTTGCATATGGGAAGCTTATCTGCACTTTTGCATGGAAACAAAGGAGGAGGTAGGACACCTCTGACTTGGGAAATGAGATCAGGCATTGCACTCGGAGCGGCTCGTGGTATCGAGTACCTACATTCGCAAGGGTCGAATGTTTCACATGGAAACATCAAATCATCTAACATCCTTCTAACCAAGACCTATGAAGCAAGAGTATCTGATTTCGGTCTTGCACATCTTGTCGGTCCTTCATCCACACCCAACAGGGTAGCCGGCTACCGTGCTCCCGAGGTAACCGATCCTCGAAAAGTATCTCAAAAAGCCGACGTATACAGCTTTGGCGTACTACTCTTGGAACTTCTTACCGGAAAAGCTCCAACTCACGCCCTCATGAACGACGAAGGAGTGGACCTTCCGAGATGGGTGCAATCGGTTGTTAAAGAAGAGTGGACCTCCGAGGTCTTTGATCTCGAACTACTTAGGTACCAAAACGTTGAAGAGGAAATGGTTCAGCTCTTGCAACTCGCAGTAGATTGTGCAGCAACGTACCCCGATAACCGCCCCTCAATGTCGCAAGTACGACAGCAAATAGAAGAGTTGCATAAGTCTAGCTTGAAAGACGGTTCTCAAGACCAAATTCAACACCCTGATTTGATCAATGACATGGATGATATCTCTTCTAGATGA 2022 0.4629 MQMQIQMQMQMQMQMKLFFFFLLLSFVKPDLTSERAALLNLRAAVGGRTFLWNTTSATPCNWSGVKCDQNHTHVVELHLPAVSLTGKLPAGVFPDLPNLHTLSLRFNSLSGPLPSDLSACTSLRNLYLQQNTLSGELPATLIQLTGLVRLNLASNNFSGKIPVGFQNLTRLKTLYLQNNLFAGSLDELNRVELDQFNVSDNMLNGSVPENLQAFGKDSFLGNSLLCGKPLNPCPKEGGANSENGGGNRNSSSVDDNQGLVKNKKKSKLSGGAIAGIVIGSVVVLLFIVFAMILLCRNKNGEKTSSIDEVAATLKHNQHDEGIHSENVGNGNGYSSAAALAVPAVVNEGVVVGGGDKKLVFFRNWGKVFGLEDLLRASAEVLGKGTFGTSYKAVLEVGPVVVAVKRLRDVTISEREFKEKIERVGTMVHENLAPLRAYYYSRDEKLLVHDYLHMGSLSALLHGNKGGGRTPLTWEMRSGIALGAARGIEYLHSQGSNVSHGNIKSSNILLTKTYEARVSDFGLAHLVGPSSTPNRVAGYRAPEVTDPRKVSQKADVYSFGVLLLELLTGKAPTHALMNDEGVDLPRWVQSVVKEEWTSEVFDLELLRYQNVEEEMVQLLQLAVDCAATYPDNRPSMSQVRQQIEELHKSSLKDGSQDQIQHPDLINDMDDISSR 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00411 673 Gene3D Transferase(Phosphotransferase) domain 1 451 668 - -
Vivi4g00411 673 Gene3D Ribonuclease Inhibitor 31 188 IPR032675 -
Vivi4g00411 673 SUPERFAMILY L domain-like 47 231 - -
Vivi4g00411 673 Gene3D Phosphorylase Kinase; domain 1 357 450 - -
Vivi4g00411 673 ProSiteProfiles Protein kinase domain profile. 375 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00411 673 FunFam Probable inactive receptor kinase RLK902 31 189 - -
Vivi4g00411 673 MobiDBLite consensus disorder prediction 242 257 - -
Vivi4g00411 673 FunFam pollen receptor-like kinase 1 345 450 - -
Vivi4g00411 673 PANTHER OS05G0588300 PROTEIN 17 649 - -
Vivi4g00411 673 FunFam Probable inactive receptor kinase At1g48480 451 654 - -
Vivi4g00411 673 MobiDBLite consensus disorder prediction 236 258 - -
Vivi4g00411 673 MobiDBLite consensus disorder prediction 649 673 - -
Vivi4g00411 673 Pfam Protein kinase domain 378 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00411 673 Gene3D Ribonuclease Inhibitor 193 233 IPR032675 -
Vivi4g00411 673 SUPERFAMILY Protein kinase-like (PK-like) 379 648 IPR011009 -
Vivi4g00411 673 Pfam Leucine rich repeat N-terminal domain 33 68 IPR013210 -
Vivi4g00411 673 Pfam Leucine rich repeat 74 133 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00411 Vivi-Chr4 8778882 8781610 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00411 30 662 Receptor kinase-like Gene Family AT1G48480 58.934 0.0 721
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vivi4g00411 Pkinase 6.6e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00411 - - gmx:100781597 865.914