Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00409 ATGGTCTTCAAGGGAAGATTCTTCTCTTCCAAAAAATCTGATACTTCTAGTCCAGATGCTTCTTCCAACAGTCCTCGATCAATCTCTTCGAACTCTCCTAGATCCGATAAGAAAAAACCTAAATCAACCGTTGCTCAAACCCTAACTTCCACCTTCACCTCCACCGCCACCGCCGGAACCGGCGGCGGAGGAGGCGGAAGTGGACTCGGCGGAGGTGCGTCTACTCGGAAGACGCAAGTTAAGGAAGGGACTAAGAAGAAGGATGCTGTAAAAGGAAAGGAGAGTGAGATTCTGTTGGAATCTCGCTCTAGGTCTGGTTCGAAGAAACTGACTCCGGCGACGGTGGCGGAGGTGAAGGAGTTACCGTCGACTTTGCCTTCGCCGTATTCGTCGAATTCTTCTGCCGCGGCTTCGGTTTCGCCGATTTTAGCGTCGTCGTTAGGGTTGAATAGGATTAAGACGAGATCGGGGCCGTTACCTCAGGAGAGTTTCTTTGGTTTTAGAGGTGATAAGGGAGGAGCTGCGGCGGCGCTTGGTGCTAGTAATCTTTCGAGGCCTGGTGTTGGGAAGAAGAAGGAGGTTGGGAGTCAGAATAGAGTAGGGTTTCGGGATGGTTTGGGGATTGGTGGTAGTGTTAATCATGGAAGCAGTTCGGGGAGTGGTGCGCAGACTATGGAACAGAGTCCGGTTGTGTTGCCGCGATCGCGGTTGCAGAATGGGGAATCGTCTTCGGAAGCAGGAGAGCAGGCATCATCACAGACTCAGACTGGAGGCTTAAGAAGTGACGATGTTTGCACGCCAGAGGCCGCATATGATTTTGAGAATCCGAAAGAATCTGAATCTCCTCGTTTTCAAGCTATATTACGTGTCACAAGTGCCCCCGGAAAGAGGTTTCCTGGTGATATAAAGAGTTTTTCGCACGAGTTAAATTCTAAAGGTGTTCGGCCTTTTCCGTTTTGGAAGCCTCGAAGGTTAAATAATAACCTTGAGGAGATCTTGGTTGTTATTAGGGCTAAATTTGATAAAGAAAAGGAAGAGGTGAACTCCGAACTGGCTATTTTTGCAGCAGACCTGGTTGGAGTTCTTGAAAAAAATGCAGATAATCATCCGGAATGGCAAGAGACAATTGAGGACTTGCTAATTTTGGCCAGGCGCTGTGCTATGACCACATCTGGCGAGTTTTGGCTTCAGTGTGAAAGCATAGTTCAGGACTTGGATGATAGGCGTCAAGAGCTTCCTCCGGGGACACTAAAGCAGCTTCATACTCGAATGCTCTTCATTCTTACACGGTGTACTAGGTTGTTGCAATTCCACAAGGAAAGTGCTTTGGCTGAGGATGAACACTTTGTCAATCTCCGTCAATCCAGAGTCTTGCATACTACTGGAAAATCTATTCCTCCTAGTTCGGTAAGGGATTCTAAAAGTACTGGTGTTGCAAAGACCTCGAAGGCTTCAACAAAGAAAGCTTATAGCCAAGAGCAGAGTACCATGGGGTGGAAAAAAGGTGTCTTGAAACCAGAGATTCAGTTGCCTCCTACTGATGATGACATTTTAAAAAACTTTGAGTCTCCTGGCAGGAATCGGATGGCTTCATGGAAAAAATTCCCATCTCCATCAGAAAAAAGCCCAAAAGAAACTGTTCAATTGAAGGACCGAAGTTATGGGACAGTTGATGTTGAACCTTCAAAGACATCAGATAAGAAATTAAATTCTGATATAGATCTCTCTGCTGCCAAGCCTTCTGAGCTTCTCCCTGTCAAAGATTCCCATGACCATGCTTCCAAGCACCAACATAAAGTTTCCTGGGGCTATTGGGGAGACCAGCAGAATAATAATGAAGATAATTCAATAATTTGTCGAATATGTGAAGAGGATGTACCGACTTTACATGTTGAAGATCATTCAAGGATTTGTGCAGTTGCTGACAGATGTGATCAGAAGGGTCTGAGTGTCAATGAGCGTCTTGTAAGAATTTCCGAAACATTAGAAAAGATGATGGAATCATCTACTCAGAAGGATTCACAACAAATGGTCGGAAGTCCTGATGTTGCAAAAGTGTCGAATTCAAGTATGACTGAAGAATCTGAAGTTCTTTCACCTAAACTTAGTGATTGGTCACGCAGAGGCTCAGAGGATATGCTAGACTGTTTCCCTGAACCTGATAATTCCGTTTTTATGGATGAGCTAAAGGGATTGCCATTAATATCATGTAGAACTCGTTTTGGTCCAAAGTCTGACCAAGGTATGACAACATCATCTGCAGGGAGCATGACTCCTAGGTCTCCTTTACTGACACCAAGGACAAGTCAGATTGACTTGCTCTTGGCGGGGAAGGGTGCTTATTCTGAACATGATGATCTGCCTCAGATGAATGAACTTGCTGATATAGCACGATGTGCAGCCAATGTTAGTCTGGACGATGATCGTACAGCGTCGTATTTATTATCTTGTCTTGATGATTTGAGGGTTGTCGTAGAACGAAGGAAGTTCTACGCACTTACCGTGGAAACCTTTGGAACACGCATCGAGAAGCTGATTCGTGAGAAGTATTTGCAGCTTACTGAGATGGTGGATGTTGAAAAGATAGATGTAGATAGCCCTGTAATGGATGATGATGTCATCTTGGAAGATGACGTGGTTCGCAGCTTGAGAACAAGCCCAATTCATTCTTCAAAGGATCGTACCTCTATTGATGACTTTGAGATTATAAAACCTATCAGTCGTGGGGCATTTGGAAGGGTTTTCTTGGCTAAGAAGAGGACGACTGGTGATCTTTTTGCAATAAAGGTTCTTAAGAAAGCAGATATGATCCGTAAGAATGCTGTAGAAAGTATATTAGCAGAACGTGATATCTTAATTACAGTGCGCAATCCTTTTGTGGTTCGGTTTTTCTATTCTTTTACATGTCGTGAGAACTTGTATCTTGTCATGGAATATCTGAATGGTGGAGACTTGTATTCATTACTAAGGAATTTAGGTTGTCTAGACGAAGAAGTTGCCCGTGTATATCTGGCTGAAGTGGTTCTTGCATTAGAGTATTTGCATTCACTGCGTGTGGTTCATCGTGACTTGAAGCCGGACAATTTATTGATTGCACATGACGGTCATGTCAAGTTGACAGATTTTGGGCTTTCAAAAGTTGGTCTCATCAACAGCACAGATGACTTATCTGGTCCGGCAGTGAGTGGGACATCCCTACTTGAGGAGGATGAGTCAGAAACATTTACATCGGAGGATCAAAGGGAACGGAGGAAGAAGCGTTCCGCTGTTGGCACACCTGATTACTTAGCTCCTGAGATACTTTTAGGAACTGGACATGGGTATACTGCGGATTGGTGGTCTGTTGGGGTCATTTTATTTGAGTTGCTTGTTGGTATTCCACCCTTCAATGGAGAGCATCCTCAGACTATATTTGATAATATTCTTAATCGTAAGATACCTTGGCCTGAAGTTCCTGAAGAAATGAGTTTTGAAGCACATGATCTTATTGACCGATTGTTGACAGAAGATCCTAATCAAAGACTAGGGGCTAGAGGGGCTTCAGAGGTGAAGCAGCATGTTTTCTTCAAGGACATAAACTGGGACACGCTTGCCAGGCAAAAGGCTGCATTTGTTCCTGCTTCTGAGAGTGCTCTAGACACCAGTTACTTCACTAGTCGCTACTCATGGAATACTTCTGACGGCGGCCTTATTTACCCGCCAAGTGATTTTGAAGATTCAAGTGATGCCGATAGCTTAAGTGGCAGCAGCAGTTGCCTGAGCAATCGCCATGATGAAGTGCAGGGAGATGAATGTGGGGGTCTTGCTGAGTTTGATTCTAGTTCTTCCGCCAATTACTCTTTTAGTAATTTCTCCTTTAAGAATCTCTCCCAGCTTGCATCAATCAATTATGATCTCACCAAGGGATGGAAAGATGATCCCTCAACAAATTCTAGTGCATAG 3942 0.4439 MVFKGRFFSSKKSDTSSPDASSNSPRSISSNSPRSDKKKPKSTVAQTLTSTFTSTATAGTGGGGGGSGLGGGASTRKTQVKEGTKKKDAVKGKESEILLESRSRSGSKKLTPATVAEVKELPSTLPSPYSSNSSAAASVSPILASSLGLNRIKTRSGPLPQESFFGFRGDKGGAAAALGASNLSRPGVGKKKEVGSQNRVGFRDGLGIGGSVNHGSSSGSGAQTMEQSPVVLPRSRLQNGESSSEAGEQASSQTQTGGLRSDDVCTPEAAYDFENPKESESPRFQAILRVTSAPGKRFPGDIKSFSHELNSKGVRPFPFWKPRRLNNNLEEILVVIRAKFDKEKEEVNSELAIFAADLVGVLEKNADNHPEWQETIEDLLILARRCAMTTSGEFWLQCESIVQDLDDRRQELPPGTLKQLHTRMLFILTRCTRLLQFHKESALAEDEHFVNLRQSRVLHTTGKSIPPSSVRDSKSTGVAKTSKASTKKAYSQEQSTMGWKKGVLKPEIQLPPTDDDILKNFESPGRNRMASWKKFPSPSEKSPKETVQLKDRSYGTVDVEPSKTSDKKLNSDIDLSAAKPSELLPVKDSHDHASKHQHKVSWGYWGDQQNNNEDNSIICRICEEDVPTLHVEDHSRICAVADRCDQKGLSVNERLVRISETLEKMMESSTQKDSQQMVGSPDVAKVSNSSMTEESEVLSPKLSDWSRRGSEDMLDCFPEPDNSVFMDELKGLPLISCRTRFGPKSDQGMTTSSAGSMTPRSPLLTPRTSQIDLLLAGKGAYSEHDDLPQMNELADIARCAANVSLDDDRTASYLLSCLDDLRVVVERRKFYALTVETFGTRIEKLIREKYLQLTEMVDVEKIDVDSPVMDDDVILEDDVVRSLRTSPIHSSKDRTSIDDFEIIKPISRGAFGRVFLAKKRTTGDLFAIKVLKKADMIRKNAVESILAERDILITVRNPFVVRFFYSFTCRENLYLVMEYLNGGDLYSLLRNLGCLDEEVARVYLAEVVLALEYLHSLRVVHRDLKPDNLLIAHDGHVKLTDFGLSKVGLINSTDDLSGPAVSGTSLLEEDESETFTSEDQRERRKKRSAVGTPDYLAPEILLGTGHGYTADWWSVGVILFELLVGIPPFNGEHPQTIFDNILNRKIPWPEVPEEMSFEAHDLIDRLLTEDPNQRLGARGASEVKQHVFFKDINWDTLARQKAAFVPASESALDTSYFTSRYSWNTSDGGLIYPPSDFEDSSDADSLSGSSSCLSNRHDEVQGDECGGLAEFDSSSSANYSFSNFSFKNLSQLASINYDLTKGWKDDPSTNSSA 1313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00409 1313 MobiDBLite consensus disorder prediction 1 113 - -
Vivi4g00409 1313 ProSiteProfiles Protein kinase domain profile. 900 1189 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00409 1313 MobiDBLite consensus disorder prediction 1234 1253 - -
Vivi4g00409 1313 MobiDBLite consensus disorder prediction 1056 1089 - -
Vivi4g00409 1313 ProSiteProfiles AGC-kinase C-terminal domain profile. 1190 1296 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vivi4g00409 1313 MobiDBLite consensus disorder prediction 460 498 - -
Vivi4g00409 1313 Coils Coil 326 346 - -
Vivi4g00409 1313 CDD STKc_MAST_like 906 1194 - -
Vivi4g00409 1313 FunFam probable serine/threonine protein kinase IREH1 898 987 - -
Vivi4g00409 1313 Pfam Protein kinase domain 900 1189 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00409 1313 MobiDBLite consensus disorder prediction 79 103 - -
Vivi4g00409 1313 Gene3D Transferase(Phosphotransferase) domain 1 984 1207 - -
Vivi4g00409 1313 PANTHER SERINE/THREONINE-PROTEIN KINASE 595 1286 - -
Vivi4g00409 1313 MobiDBLite consensus disorder prediction 9 31 - -
Vivi4g00409 1313 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1019 1031 IPR008271 GO:0004672|GO:0006468
Vivi4g00409 1313 MobiDBLite consensus disorder prediction 460 573 - -
Vivi4g00409 1313 SMART serkin_6 900 1189 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00409 1313 MobiDBLite consensus disorder prediction 42 61 - -
Vivi4g00409 1313 MobiDBLite consensus disorder prediction 211 261 - -
Vivi4g00409 1313 Gene3D Phosphorylase Kinase; domain 1 898 1218 - -
Vivi4g00409 1313 SUPERFAMILY Protein kinase-like (PK-like) 897 1230 IPR011009 -
Vivi4g00409 1313 MobiDBLite consensus disorder prediction 179 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00409 Vivi-Chr4 8763351 8776234 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00409 72 1307 AGC Kinase Gene Family AT3G17850 66.086 0.0 1602
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_MAST Vivi4g00409 Pkinase 7.2e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00409 - - tpra:123913507 2164.42