Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00408 ATGGAGAGAGAATTTCTTGGCTTCACTTCCAAAAATAGTCCATGGATTACAATCAAAGAAGATGCTTCCAACAAACCAAAAGAACCAGTTAGGAGTTCAGCAATGCAGTGGTCATTCTCAAATAATGCTTCAAATCTTCCTCAATTCTTGTCCTTTAAGAACACTCATGAAGATAGGTCAAGAAACATTGTTATGGATCCAATAGGTTCTTCTGGATATATGACTACACAGGAAAATGTTACCATAGGAAATAAGCATGGAGTTTATCCTATGCAATGTTCTGAAGCACAAACAATATGCAATCAAGAAACAAGAATATTTTCAGTATCAAACCAATCTAATAATCAAATGTGTTCTGTTCTTCCACCAAATCTTGCTACTACCGGAATCAACATCGTTAATTCGGTTACAAGATCGCAATCTTTTGGTTCTAAATCCTCTGCTACACCTCTATCTGTTCTTCCTTCAATAGGTTCCATTGTTGGCTCTACTGACCTAAGGAATAGGAATTGTTCCAAATCCAATGGTACTATACCTGCTCAATTAACCATTTTTTATGGTGGATCAGTATGTGTTTATGATGATATATCTCCTGAAAAGGCTAAGGCTATCATGTTACTAGCTGGAAATGGAACTAAAAAGCAGCCAGAAATTTCTATTCCTTCTAAAAAAGATGGTTTCATTATAAGTCAATCCTATGCATCACCATTGCCAAGTCCTCTTCCAATGACCTCTCATGCAAATTCTCAACAAAGAGGAGGATCAAGTAGCAACAATGATATCACAATTCTAAGATCTTTAAGACCTTCAAGTGTCCCTAATAACCATTTAGAATCTTCTATTGTTGCTACTTCTATAGGATCTGCACCTAAAGAAATGATTCAATCAGTATGCTTGCCTCAAGCGCGAAAAGCATCTTTGACTCGGTTTTTGGAGAAACGAAAGGAAAGGGCAATGAGCACATCACCATACTATATGAACAAGAAATCACATGAAAGCAGCACTCCTGGATCAGATAGTGCAAGTTTCTCCATTGACTTTTCTGGTTCAAGTTCTCAAGCAACTACAAACTTAAGAACATCATGTATGGAAGTTTAG 1098 0.367 MEREFLGFTSKNSPWITIKEDASNKPKEPVRSSAMQWSFSNNASNLPQFLSFKNTHEDRSRNIVMDPIGSSGYMTTQENVTIGNKHGVYPMQCSEAQTICNQETRIFSVSNQSNNQMCSVLPPNLATTGINIVNSVTRSQSFGSKSSATPLSVLPSIGSIVGSTDLRNRNCSKSNGTIPAQLTIFYGGSVCVYDDISPEKAKAIMLLAGNGTKKQPEISIPSKKDGFIISQSYASPLPSPLPMTSHANSQQRGGSSSNNDITILRSLRPSSVPNNHLESSIVATSIGSAPKEMIQSVCLPQARKASLTRFLEKRKERAMSTSPYYMNKKSHESSTPGSDSASFSIDFSGSSSQATTNLRTSCMEV 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00408 365 SMART tify_2 175 210 IPR010399 -
Vivi4g00408 365 MobiDBLite consensus disorder prediction 323 342 - -
Vivi4g00408 365 Pfam tify domain 179 209 IPR010399 -
Vivi4g00408 365 ProSiteProfiles Tify domain profile. 175 210 IPR010399 -
Vivi4g00408 365 MobiDBLite consensus disorder prediction 239 261 - -
Vivi4g00408 365 MobiDBLite consensus disorder prediction 321 342 - -
Vivi4g00408 365 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 100 336 IPR040390 -
Vivi4g00408 365 Pfam Jas motif 300 325 IPR018467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00408 Vivi-Chr4 8724601 8729651 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00408 35 330 Tify Gene Family AT3G17860 40.506 9.85e-44 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vivi4g00408 tify 3.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00408 K13464 - gmx:100807288 410.223