Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00390 ATGTCTATCTCAGGAGCATTGCTAGTGACCCTTTACAAAGGTGCTCCCATTCGCAGCTTTCGAACTCAACCCTCGACACCGCAACATTTCCAGACTCTTTTAGAAGAAACCAGTTTTGTTGGAGCAGATATTGCTAATGTTTGCAATGAAGCTGCCCTGATTGCTGCAAGAACCGATGAAGCACAAGTCACAATGGATCATTTCGAGGCAGCTATTGATAGGATCATTGGTGGTTTGGAGAAGAAGAACAAGGTCATTAAGAATGAAGATCTTGAAGAGTTAAAGGAACTGGGTTCTGATACATTTGGGACTGTTTATCATGGAAAATGGAGAGGAACAGATGTTGCTATCAAGATAATAAAGAAGAGTTGCTTCACTGGTCGATCATCTGAGCAAGAGAGACTGGATCTCAGAAAGAAGCTAGCTAGGATGGAATACGGTGGTGGGATAGTGGACGACGGCGGTGTATTTGGGACTATGGTTGGAGGAGATCAAGGAGATATAATTGAGGAGCTCTTAGGAGAAGGTTGCTGGATTGAAGCTAGTGAGAATAATATGATGGCTATGCAGCAAACTGCATCGACGCAGCAACAACACTACATGGCCAATAATATTCCCATTGGAATGGGAGAAGGTGACCATGTTAATCATCATCAAGTTGATCAGGAAAGTGGTTTTGTTGTTGGGAAGAGATGGTGGATCGGGCTGAGGGCGAGTCAAGGTCCATCGACTTTGGTGAAAGAGAGATTAGTAGTTGCTATTGGTTACTTAAAAGAGTACACAAAGAACTCTTCCAACAACGTTCTTATTCACATATGGGTGCCTGTTCTAAGGAGGAGATCAGCAATTCAATATCTGCAGCAGGATTCCAGTTCATCTGTTCCGATTTCTGTGAATCCAAACATGAATGTTCATGTTCGATTCTTTAGAAGCCACGAGTATCCGCGACATCAGCAACTGCAGCAACAGTATGGTTCTCTTCTAGCATTTCCTGTGTTCGAAAGAGGAAGTGGAACATGTCTAGGTGTCATTGAGTTTGTTATCGCCAATCAAAACCTCATCAATTATCGTCCACAACTCGATCATCTCTCCAATTCTCTCAAGGCTGTTGATTTTAGAAGTAGCCACAACATGAATATTCCACCAGCAGTAAAGGTTTTTGAGGAGTTGTACGAAGCAACGGTGAATGAGATCGTAGAGGTGTTTGTATGCAAGACTCATAATTTGCCACTAGCGCTAACATGGGCTCCTTGCATACAACAACAAGGAGGAGGAAAAGGTACTACCGGTGGTGGTGGATGCAGTGTTTCGATTACAGTTCCAACGGATCAGATGAACAATAATAATCATATGATGAGTTGCATATCGATTATTGATTCAGCTTGTTATGTTGGTGACATGGAGATGTTAAGATTTCAAGATCAAATGGAAATGGTTGAAGAGGATAAAGATATAGAAATGTTGCCAAAACAAAAATAA 1479 0.4192 MSISGALLVTLYKGAPIRSFRTQPSTPQHFQTLLEETSFVGADIANVCNEAALIAARTDEAQVTMDHFEAAIDRIIGGLEKKNKVIKNEDLEELKELGSDTFGTVYHGKWRGTDVAIKIIKKSCFTGRSSEQERLDLRKKLARMEYGGGIVDDGGVFGTMVGGDQGDIIEELLGEGCWIEASENNMMAMQQTASTQQQHYMANNIPIGMGEGDHVNHHQVDQESGFVVGKRWWIGLRASQGPSTLVKERLVVAIGYLKEYTKNSSNNVLIHIWVPVLRRRSAIQYLQQDSSSSVPISVNPNMNVHVRFFRSHEYPRHQQLQQQYGSLLAFPVFERGSGTCLGVIEFVIANQNLINYRPQLDHLSNSLKAVDFRSSHNMNIPPAVKVFEELYEATVNEIVEVFVCKTHNLPLALTWAPCIQQQGGGKGTTGGGGCSVSITVPTDQMNNNNHMMSCISIIDSACYVGDMEMLRFQDQMEMVEEDKDIEMLPKQK 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00390 492 PANTHER PROTEIN NLP8 208 476 IPR045012 GO:0003700
Vivi4g00390 492 Pfam AAA+ lid domain 39 70 IPR041569 -
Vivi4g00390 492 Gene3D - 23 73 - -
Vivi4g00390 492 Gene3D Phosphorylase Kinase; domain 1 74 145 - -
Vivi4g00390 492 SUPERFAMILY Protein kinase-like (PK-like) 84 127 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00390 Vivi-Chr4 8448699 8451287 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00390 167 472 NLP Transcription Factor Family AT2G17150 32.402 1.46e-47 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00390 - - vvo:131596751 961.059