Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00389 ATGTGTTTCAGACACTGGTTTTTGTGCCTCTATTGCACAATCTACGCCCTAATATTCTTACTCATAACCACCTCAATCATCTTCTTGATAGTAATCTCTCCCTCAAGCGTGAAATTCCACATAACCGACGCTACTCTCACCGAGTTCAACCTCACAAACAACAACTTATACTACAACTTCAAAGTCAACATCACAGCAAGAAACCCTAACAACAACATCATAGTCTATTACCGAAGAATCACCGCGATTGCTTGGTACAAAGACAATGAATTCAGTTATGTGAGTTTGGCACCCTTTGATCAAGGACACAAGAATACAACATATCTTGGACCTATAGAGTTCAAAGGGAACCGTGTGATTAATCTAGGACGTAAACAACTCGATGAGTATAGGGAAGAGACGCGGCTCGGGGTTTACAATGATTTGGCTGTTGATTTGGATGTTCGAATTAGAGCTAAGTTTGGAAGCTTCTTTAAGAGTGGACGGTTTAATCCACCGGTTGTGCAGTGTCGTCGGTTGAGCATTCCTTTGGTTTCTTCTTCCAAGGGTAACTCATCATCACCATCAATATTTTCTTTTAGAGTCAGAAGATGTAGTAGTGGTTCTTTCTTTACCGATCGTGATGCAGATGCAGCAGCAGCTTGA 645 0.414 MCFRHWFLCLYCTIYALIFLLITTSIIFLIVISPSSVKFHITDATLTEFNLTNNNLYYNFKVNITARNPNNNIIVYYRRITAIAWYKDNEFSYVSLAPFDQGHKNTTYLGPIEFKGNRVINLGRKQLDEYREETRLGVYNDLAVDLDVRIRAKFGSFFKSGRFNPPVVQCRRLSIPLVSSSKGNSSSPSIFSFRVRRCSSGSFFTDRDADAAAA 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00389 214 PANTHER OS05G0367900 PROTEIN 9 182 IPR044839 GO:0098542
Vivi4g00389 214 Pfam Late embryogenesis abundant protein 63 164 IPR004864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00389 Vivi-Chr4 8400207 8401287 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00389 31 181 SNARE and Associated Proteins AT1G32270 31.169 2.04e-14 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00389 - - vvo:131598780 297.36