Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00380 ATGGAGAGAGAATTTCTTGGCTTCACTTCCAAAACTAGTCCATGGATTACAATCAAAGAAGATGCCTCCAACAAACCAAAAGATCCAGTTAGGAGTTCAGCAATGCAGTGGTCATTCTCAAATAATGCTTCAAATCTTCCTCAATTCTTGTCCTTTAAGAACACTCATGAAGATAGGTCAAGAAACATTGTTATGGATCCAATAGGTTCTTCTGGATATATGACCACACAGGAAAATGTTACCATAGGAAATAAACATGGAGTTTATCCTATGCAATGTTCTGATGCACAAACAATTTGCAATCAAGAATCAAGAATATTTTCAGTATCAAACCAATCTAATAATCAAATGTGTTCTGTTCTTCCACCAAATCTTGCTACTACCGGACTCAACATCGTTAATTCGGTTACAAGATCGCAATCTTTTGGTTCTAAATCCTCTGCTACACCTCTATCTGTTCTTCCTTCAATAGGTTCCATTGTTGGCTCTACTGACTTAAGGAATAATAAGAATTGTTCCAAATCCAATGGTACTATACCTGCTCAATTGACCATTTTTTATGGTGGTTCAGTATGTGTTTATGATGATATATCTCCTGAAAAGGCTAAGGCTATCATGTTACTAGCTGGAAATGGCACTAAAAAGCAGCCAGAAATTTCTATTCCTTCCAAAAAAGATGGTTTTATTATAAGTCAATCCTATGCATCACCATTGCCAAGTCCTCTTCCAATGATTTCTAATGCAAATTCTCAACAAAGAGGAGGATCAAGTAGCAACAATGAAATCACAATTCTAAGATCTTTAAGACCTTCAAGTGTCCCTAATAACCATTTAGAATCTTCTATTGTTGCTACTTCTATAGGATCTGCACCTAAAGAAATGATTCAATCAGTATGCTTGCCTCAAGCGCGAAAAGCATCTTTGACTCGATTTTTGGAGAAGCGAAAGGAAAGGGCAATGAGCACATCACCATACTATATGAACAAGAAATCACATGAAAGCAGCACTCCTGGATCAGATAGTGCAAGTTTCTCCATTGATTTTTCTGGTTCAAGTTCTCAAGCAACTACAAACTTAAGAATATCATGTATGGAAGTTTAG 1101 0.3642 MEREFLGFTSKTSPWITIKEDASNKPKDPVRSSAMQWSFSNNASNLPQFLSFKNTHEDRSRNIVMDPIGSSGYMTTQENVTIGNKHGVYPMQCSDAQTICNQESRIFSVSNQSNNQMCSVLPPNLATTGLNIVNSVTRSQSFGSKSSATPLSVLPSIGSIVGSTDLRNNKNCSKSNGTIPAQLTIFYGGSVCVYDDISPEKAKAIMLLAGNGTKKQPEISIPSKKDGFIISQSYASPLPSPLPMISNANSQQRGGSSSNNEITILRSLRPSSVPNNHLESSIVATSIGSAPKEMIQSVCLPQARKASLTRFLEKRKERAMSTSPYYMNKKSHESSTPGSDSASFSIDFSGSSSQATTNLRISCMEV 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00380 366 Pfam tify domain 180 210 IPR010399 -
Vivi4g00380 366 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 99 337 IPR040390 -
Vivi4g00380 366 SMART tify_2 176 211 IPR010399 -
Vivi4g00380 366 Pfam Jas motif 301 326 IPR018467 -
Vivi4g00380 366 ProSiteProfiles Tify domain profile. 176 211 IPR010399 -
Vivi4g00380 366 MobiDBLite consensus disorder prediction 324 343 - -
Vivi4g00380 366 MobiDBLite consensus disorder prediction 322 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00380 Vivi-Chr4 8297113 8302085 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00380 35 331 Tify Gene Family AT3G17860 40.694 3.71e-44 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vivi4g00380 tify 3.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00380 K13464 - gmx:100807288 407.912