Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00356 ATGGAAAAAATGGAGGAATCAACAGCAGCATCAGCAGCAGCAGCATCTGTTCCAAAATCTCTCATGGAGAATCTCTTAGGTCTTTTGAGGGTTCGTGTCAAACGTGGTGTCAATCTTGCTGTTCGTGATGTTCGTAGCAGCGACCCTTATCTTGTCATCAAGATGTATAATCAGAAACTTAAGACTCGTGTGATTAAAAGGGATGTTAATCCTGAGTGGAATGAAGATCTTACTCTTTCTGTCATAGATCCTAATCACATCGTTTCAATTACTGTGTATGATCACGACACATTTAGCAAAGATGACAAAATGGGAGACGCGGAGTTTGACGTCTCGGCCTATATAGAAGCCTTGAGGATGAACACAGCCGGCCTTTCAAACGGGACCATACTCAAAAGAATTCAACCAAGTAAGCACAACTGCCTTACCGAGGAGAGCCGTATCTATTATAACAGCGGAAAGATTATTCAAGATATGATTCTTAGATTGCAAAATGTGGAATGTGGTGAAGTTGAAATCAGTTTGCACTGGATTGATCTTCCTGGTTCTAAAGGCTTATGA 561 0.4118 MEKMEESTAASAAAASVPKSLMENLLGLLRVRVKRGVNLAVRDVRSSDPYLVIKMYNQKLKTRVIKRDVNPEWNEDLTLSVIDPNHIVSITVYDHDTFSKDDKMGDAEFDVSAYIEALRMNTAGLSNGTILKRIQPSKHNCLTEESRIYYNSGKIIQDMILRLQNVECGEVEISLHWIDLPGSKGL 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00356 186 SMART C2_3c 28 123 IPR000008 -
Vivi4g00356 186 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 24 184 IPR044562 -
Vivi4g00356 186 ProSiteProfiles C2 domain profile. 13 125 IPR000008 -
Vivi4g00356 186 Gene3D C2 domain 23 184 IPR035892 -
Vivi4g00356 186 Pfam C2 domain 27 113 IPR000008 -
Vivi4g00356 186 CDD C2_ArfGAP 26 169 - -
Vivi4g00356 186 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 23 178 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00356 Vivi-Chr4 7913352 7914809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00356 59 186 C2H2 Transcription Factor Family AT1G70790 56.923 9.64e-50 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00356 - - gmx:100810504 288.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g04077 3 71087739 71089568 Vivi4g00356 4 7913352 7914809 ECH
Vivi5g03798 5 131974887 131975960 Vivi4g00356 4 7913352 7914809 ECH
Vivi4g04523 4 172535236 172537820 Vivi4g00356 4 7913352 7914809 ECH
Vivi4g00356 4 7913352 7914809 Vivi4g00356 4 7913352 7914809 ECH
Vivi5g06488 5 171580012 171581266 Vivi4g00356 4 7913352 7914809 PCT