Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00344 ATGGGTGGACCAGTCGGAAATCCTGAAAGCATGTCAAAAGCATGGAGAAGTCTTAGTTATAGTCTGAAAACAACTCTTGGTAGCATGGTTTTGCCACTTGGTTCTTTGACTATTGGTTTAGCTCGGCATCGCGCGTTGTTATTTAAGGTTCTAGCTGATAGATTGAGTATCTCGTCGCGGTTGGTGAAAGGACAGCAATATACAGGTTCTGATGATGTGGCAATAAACTTCGTCAAGATTGATGGAAGGGAGTATATTGTTGATCTAATGGCAGACCCTGGAACTCTTATTCCATCTGACGCTACTGGATCGCATATTGAGTATGATGCATCCTTTTTTGAGGCAAGCCCTTCATCAAGAGACCTCGATTCGTCTCGTGTAGCATCATCTAGCAGTGGAGTTGGAAGTTCATCTGAAGAAACTTCGGATGTTGGAATGTCGGGCAGAGGAAACAGATCAAAACATCACCATGTTAAGAAGGTTAATTCATATGTGCATTCAAGATCATCTTCTTGGAGTGAAGGGATCGGTTCCTCTGCCGTAAACCGAATGAAAGCCAGAAACGTTTCGCAATTTATGATCGATACTACCAAGGAAAATCCTCACTTGGCTAAAAAACTTCACGATGTTTTACTCGAAAGTGGTATTGTTCCTCCTCCAAATTTATTTTCTGACATTTATCACGAAGAATCTGTTTTCTCAACGAAAGTAAAAGAACATAAACAAGAAAGTGAACATCGAGAAATGGAATTCGATGATAGTCTCGGTCCTGCTAGATTTAAGCTTGTAGAAGGTTTAGGAACCAATCTTCCTCTTCATACAAAAGAAGATGTTGGAAAATTTATACCAAGTCAGGTAAAATACGGGAAAAAGATGCCAGCTGCTGCAGCGGCAGCCGCAGCAGCCGCAGTTGTTGCATCTTCTATGGTAGTTGCTGTGGCAAGGTCAAACACCGACTCCAACATCGAGCTTTCAGTCTCAGCAGCTGCTACTGCTGCAGCTGTAGTAGCAGCTACTGCTGCAGTTAACAAGTATGAGCCGAGCAATCGAAGTGACGCGGATACCGAAAGTTCTGGAACGAATTTGGGAAGATCTGGAAGCTCAGTTGTTAGTAATGACAGTACGAAATCTGATTGTTCTTTAGACGAAGTTGCTGAGTATGAAATTCCGTGGGAGGAAATCACACTCGGTGAACGTATTGGACTTGGATCTTATGGAGAGGTGTATCGCGGAGAATGGCGAGGAACTGAAGTTGCTGTAAAGAGGTTTCTAAATCAAGATATATCTGGTGAAGCACTTGAAGAATTCATTAGTGAGGTCAGAATAATGAAAAGATTGAGGCATCCAAATGTGGTTCTCTTCATGGGAGCTGTAATCCGACCTCCCAATCTTTCGATTGTTACTGAATTTCTACCTAGAGGAAGCTTGTATAGATTAATTCATCGGCCAAACAATCAATTAGATGAACGAAAGCGTTTGAGAATGGCCCTTGATACCGCTCGAGGAATGAACTATTTGCACAACTGCAGTCCAGTGATAGTACATCGCGATTTGAAGTCTCCGAATCTTCTTGTTGATAAAAATTGGGTTGTAAAGGTGTGTGATTTTGGCTTATCACGTATGAAGCATAGTACATTCCTTTCTTCCAGATCAACTGCAGGCACGGCCGAGTGGATGGCTCCCGAAATGTTGAGAAATGAACCGTCAAATGAAAAGTGTGATGTCTATAGCTTTGGGGTCATATTATGGGAGCTATCTACTTTGCAGCAACCTTGGAGAGGTATGAATTCCATGCAAGTTGTTGGTGCCGTGGGTTTCCAATACCGCCGTCTTGACATTCCAGACGACATGGATCCTGCCATTGCCGATATTATCAGAAAATGCTGGCAGACAGATCCTAAAGAAAGACCTACATTTGCTGAGATATTGGCAGCTCTAAAGCCGTTACAGAAGCCAAACGTCGGTTCTCAAGTGCCTCGACCGACTGTGTCCGGCAGGCACAGAAAAGATCAATCATCTGCTGCAGAAAGATAG 2034 0.4307 MGGPVGNPESMSKAWRSLSYSLKTTLGSMVLPLGSLTIGLARHRALLFKVLADRLSISSRLVKGQQYTGSDDVAINFVKIDGREYIVDLMADPGTLIPSDATGSHIEYDASFFEASPSSRDLDSSRVASSSSGVGSSSEETSDVGMSGRGNRSKHHHVKKVNSYVHSRSSSWSEGIGSSAVNRMKARNVSQFMIDTTKENPHLAKKLHDVLLESGIVPPPNLFSDIYHEESVFSTKVKEHKQESEHREMEFDDSLGPARFKLVEGLGTNLPLHTKEDVGKFIPSQVKYGKKMPAAAAAAAAAAVVASSMVVAVARSNTDSNIELSVSAAATAAAVVAATAAVNKYEPSNRSDADTESSGTNLGRSGSSVVSNDSTKSDCSLDEVAEYEIPWEEITLGERIGLGSYGEVYRGEWRGTEVAVKRFLNQDISGEALEEFISEVRIMKRLRHPNVVLFMGAVIRPPNLSIVTEFLPRGSLYRLIHRPNNQLDERKRLRMALDTARGMNYLHNCSPVIVHRDLKSPNLLVDKNWVVKVCDFGLSRMKHSTFLSSRSTAGTAEWMAPEMLRNEPSNEKCDVYSFGVILWELSTLQQPWRGMNSMQVVGAVGFQYRRLDIPDDMDPAIADIIRKCWQTDPKERPTFAEILAALKPLQKPNVGSQVPRPTVSGRHRKDQSSAAER 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00344 677 MobiDBLite consensus disorder prediction 117 148 - -
Vivi4g00344 677 CDD STKc_MAP3K-like 400 646 - -
Vivi4g00344 677 MobiDBLite consensus disorder prediction 650 677 - -
Vivi4g00344 677 FunFam Serine/threonine-protein kinase isoform 1 385 472 - -
Vivi4g00344 677 MobiDBLite consensus disorder prediction 116 176 - -
Vivi4g00344 677 ProSitePatterns Serine/Threonine protein kinases active-site signature. 513 525 IPR008271 GO:0004672|GO:0006468
Vivi4g00344 677 MobiDBLite consensus disorder prediction 345 376 - -
Vivi4g00344 677 ProSiteProfiles Protein kinase domain profile. 394 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00344 677 Pfam Ethylene-responsive protein kinase Le-CTR1 1 97 - -
Vivi4g00344 677 Gene3D Transferase(Phosphotransferase) domain 1 473 657 - -
Vivi4g00344 677 SMART serkin_6 394 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g00344 677 Gene3D Phosphorylase Kinase; domain 1 387 471 - -
Vivi4g00344 677 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 132 651 - -
Vivi4g00344 677 SUPERFAMILY Protein kinase-like (PK-like) 373 645 IPR011009 -
Vivi4g00344 677 Pfam Protein tyrosine and serine/threonine kinase 394 645 IPR001245 GO:0004672|GO:0006468
Vivi4g00344 677 MobiDBLite consensus disorder prediction 663 677 - -
Vivi4g00344 677 PRINTS Tyrosine kinase catalytic domain signature 507 525 IPR001245 GO:0004672|GO:0006468
Vivi4g00344 677 PRINTS Tyrosine kinase catalytic domain signature 617 639 IPR001245 GO:0004672|GO:0006468
Vivi4g00344 677 PRINTS Tyrosine kinase catalytic domain signature 554 564 IPR001245 GO:0004672|GO:0006468
Vivi4g00344 677 PRINTS Tyrosine kinase catalytic domain signature 573 595 IPR001245 GO:0004672|GO:0006468
Vivi4g00344 677 PRINTS Tyrosine kinase catalytic domain signature 468 481 IPR001245 GO:0004672|GO:0006468
Vivi4g00344 677 FunFam Serine/threonine-protein kinase CTR1 473 656 - -
Vivi4g00344 677 ProSitePatterns Protein kinases ATP-binding region signature. 400 421 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00344 Vivi-Chr4 7791964 7795976 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00344 1 664 MAP Kinase Kinase Kinase AT1G73660 59.164 0.0 790
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vivi4g00344 PK_Tyr_Ser-Thr 1.1e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00344 - - vvo:131594415 1261.13